New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1838059 =	13 (1.000)	4 (0.320)	4/266	1.1	26.1%	coding (636/672 nt)	PP_1642	hypothetical protein
	?	NC_002947	1838090 =	10 (0.790)					coding (667/672 nt)	PP_1642	hypothetical protein

AGAAGGTGATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGC  >  NC_002947/1837959‑1838212                                                                                                                                      |                                                                                                                           aGAAGGTGATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCATTGTGTTGCt                                                                                                          >  1:11215/1‑150 (MQ=255)  gAAGGTGATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTc                                                                                                         <  2:240720/150‑1 (MQ=255)     ggTGATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCa                                                                                                      <  1:194120/150‑1 (MQ=255)              ctcccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaatgggagcaacacaaggctcaatggttgtcggtgatgctggcgcacaccgtcaacCATTGAGCCTTGTGTTGCTCCCATTCGCgg                                                                                               <  1:146484‑M2/30‑1 (MQ=255)                 ccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaatgggagcaacacaaggctcaatggttgtcggtgatgctggcgcacaccgtcaacCATTGAGCCTtgtg                                                                                                               <  1:209860‑M2/14‑1 (MQ=255)                 ccacaggtactgcacaggccttaagtgcggtgcgattactgtgggagcgggcatgcccgcgaatgggagcaacacaaggctcaatggttgtcggtgatgctggcgcacaccgtcaacCATTGAGCCTtgtg                                                                                                               >  2:209860‑M2/118‑131 (MQ=255)                       aaCCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGcg                                                                                    >  2:311499/1‑149 (MQ=255)                         ccagccagCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCATTGTGTTGCTCCCATTCGCGGGCATGCCCGcgaa                                                                                  <  2:11215/150‑4 (MQ=255)                            gccagcGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGcgaatgg                                                                               <  1:311499/150‑7 (MQ=255)                                            tctGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCcaca                                                                              <  1:13918/135‑1 (MQ=255)                                            tctGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCcaca                                                                              >  2:13918/1‑135 (MQ=255)                                                                       ccgcgaatgggagcaacacaaggctcaatgGTTGACGGTG‑TGC‑GCCAGCATCACCGACAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAg                                    <  1:146484‑M1/120‑1 (MQ=255)                                                                                gagCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCgg                                 <  2:48176/144‑1 (MQ=255)                                                                                gagCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCgg                                 >  1:48176/1‑144 (MQ=255)                                                                                       cacaaggctcaatgGTTGACGGTG‑TGC‑GCCAGCATCACCGACAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTgg                                       >  2:209860‑M1/15‑131 (MQ=255)                                                                                       cacaaggctcaatgGTTGACGGTG‑TGC‑GCCAGCATCACCGACAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTgg                                       <  1:209860‑M1/117‑1 (MQ=255)                                                                                                           acggtgtgcgccagcatcaccgacaacCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTcgc  <  2:146484‑M2/123‑1 (MQ=255)                                                                                                                                      |                                                                                                                           AGAAGGTGATCGACAAGCAGCCAACCAGCCAGCGCGACCTGGCTCTGGTGCAGCAGGCGTTCAACCAGTGGCATGCAGAGAGCGGGCGGCCGCTGTGCCAGTTGTCGGTGATGCTGGC‑GCA‑CACCGTCAACCATTGAGCCTTGTGTTGCTCCCATTCGCGGGCATGCCCGCTCCCACAGTAATCGCACCGCACTTAAGGCCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAATCTAACTGCCTTCGC  >  NC_002947/1837959‑1838212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.