New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1798193 =	47 (1.080)	14 (0.330)	12/260	2.7	23.1%	coding (74/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798250 =	47 (1.090)					coding (131/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

CCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1798258‑1798193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGG  >  NC_002947/1798250‑1798397                                                                                                                                                                                                                           CCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGA                                                                    >  1:229029/1‑150      GCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑TGGGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGC                                                               <  2:229029/150‑1        CTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGAGGGAGGCCGAGGGCCGGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAA                                                           >  1:902922/1‑150         TCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAA                                                                   <  1:793056/141‑1         TCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAA                                                                   >  2:793056/1‑141           CATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTT‑GGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATCTCCCCATGGAGCGCCTGG                                                                                                            <  1:733068/100‑1           CATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTT‑GGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATCTCCCCATGGAGCGCCTGG                                                                                                            >  2:733068/1‑100            ATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGC                                                       >  1:656524/1‑150                 GGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGCGGAGGTACTGGGGCGGCTGCGCGAACTGCTCAAGCGCCGCA                                                   >  1:170188/1‑150                 GGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGCGGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGATAGACTAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCA                                                   >  1:170146/1‑150                       GCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAA                                                                   >  1:780030/1‑127                       GCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAA                                                                   <  2:780030/127‑1                                GATGAAACGCACGTCGGGG‑T‑GGC‑GCGCTTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGTGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGAC                                   <  2:656524/150‑1                                                        C‑GCGCCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGAC             <  2:902922/150‑1                                                                    GGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGG  >  1:648393/1‑150                                                                                                                                                                                                                           CCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGG‑T‑GGC‑GCGCCTTGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1798258‑1798193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGG  >  NC_002947/1798250‑1798397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.