New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4635429 =	18 (0.410)	26 (0.590)	24/264	1.0	59.8%	coding (373/639 nt)	uvrY	BarA/UvrY two‑componenent system response regulator
	?	NC_002947	= 4635455	17 (0.390)					coding (347/639 nt)	uvrY	BarA/UvrY two‑componenent system response regulator

AAGGTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4635573‑4635429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGAT  <  NC_002947/4635455‑4635326                                                                                                                                                                                                                                                                                     AAGGTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTG                                                                                                                               >  2:327266/1‑150    GTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTACCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCACGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCGGGCC                                                                                                                            >  2:299812/1‑150       GTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTT                                                                                                                         <  1:507700/150‑1                      TGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTAT                                                                                                          <  1:641622/150‑1                                   CGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGA                                                                                             >  1:193391/1‑150                                         CCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCC                                                                                       >  2:297332/1‑150                                          CACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCACGCATTTGCCCGCCAGCGACGTATCAGGACGCAAATCtgcca                                                                                      >  2:512411/1‑145                                                                  TGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCA                                                              >  2:989480/1‑150                                                                                  AAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCG                                              >  2:525956/1‑150                                                                                  AAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCG                                              >  2:352940/1‑150                                                                                     GGTGCAGGCCTGGACGAAATGGGCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTC                                           <  2:768087/150‑1                                                                                          AGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGC                                                                                         >  2:129997/1‑99                                                                                          AGGCCTTGACGAAAGGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGC                                                                                         <  1:129997/99‑1                                                                                                 GACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCC                               >  2:1047571/1‑150                                                                                                     AAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATATTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAAC                           <  1:512411/150‑1                                                                                                     AAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAAC                           <  1:327266/150‑1                                                                                                      AATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTT                                            >  2:1073782/1‑132                                                                                                      AATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTT                                            <  1:1073782/132‑1                                                                                                           TCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAA                     <  1:989480/150‑1                                                                                                               GGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCA                 >  2:296522/1‑150                                                                                                                       GTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCC         <  2:193391/150‑1                                                                                                                       GTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCC          >  1:806395/1‑149                                                                                                                       GTCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCC          <  2:806395/149‑1                                                                                                                        TCTGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCT        >  1:214778/1‑150                                                                                                                          TGGCCTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCCGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGA      >  1:481284/1‑150                                                                                                                              CTTTGCCGGCCAGCGCTATAGTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGAT  >  1:297067/1‑150                                                                                                                                                                                                                                                                                     AAGGTAGTGGCGGTGACGGTGTGCGAGGAAGACCCGTTCCCCACACGCTTGTTGCAGGCCGGCGCTGCCGGCTACCTGACCAAGGGTGCAGGCCTTGACGAAATGGTCCAGGCCATTCGTCTGGCCTTTGCCGGCCAGCGCTATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4635573‑4635429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCTGGCCTTTGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAGTTGGCGCTGAAACCGTTCCAGCCGCAGGGGTCTCCGTTCGACGCGTTGTCCGAACGGGAAATCCAGATTGCCCTGATGAT  <  NC_002947/4635455‑4635326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.