| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4635429 = | 18 (0.410) | 26 (0.590) | 24/264 | 1.0 | 59.8% | coding (373/639 nt) | uvrY | BarA/UvrY two‑componenent system response regulator |
| ? | NC_002947 | = 4635455 | 17 (0.390) | coding (347/639 nt) | uvrY | BarA/UvrY two‑componenent system response regulator | |||||
GCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGAACGGGTCTTCCTCGCACACCGTCACCGCCACTACCTT > NC_002947/4635283‑4635573 | gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGAtata > 1:180272/1‑150 (MQ=255)gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGAtata > 1:325775/1‑150 (MQ=255) cacaACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAg > 2:707983/1‑150 (MQ=255) tGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGc < 1:707983/150‑1 (MQ=255) atgatCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAg < 1:559845/150‑1 (MQ=255) atcatcagggcaatctggatttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAg > 1:297067‑M1/131‑150 (MQ=255) tcagggcaatctggatttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaacggctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCa > 1:481284‑M1/127‑150 (MQ=255) agggcaatctggatttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGa > 1:214778‑M1/125‑150 (MQ=255) gggcaatctggatttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGAc < 2:193391‑M1/27‑1 (MQ=255) ggcaatctggatttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGAc > 1:806395‑M1/123‑149 (MQ=255) ggcaatctggatttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGAc < 2:806395‑M1/27‑1 (MQ=255) tttCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAAt > 1:676001/1‑150 (MQ=255) tggatttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGcc > 2:296522‑M1/116‑150 (MQ=255) tttcccgttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGa < 1:989480‑M1/39‑1 (MQ=255) gttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt < 1:327266‑M1/45‑1 (MQ=255) gttcggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagaaTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAttt < 1:512411‑M1/45‑1 (MQ=255) atcatcAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaag > 1:297067‑M2/1‑130 (MQ=255) ggacaacgcgtcgaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTc > 2:1047571‑M1/102‑150 (MQ=255) tcaGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACGGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggcca > 1:481284‑M2/1‑126 (MQ=255) aGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccaga > 1:214778‑M2/1‑124 (MQ=255) gggCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagac < 2:193391‑M2/150‑28 (MQ=255) ggCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagac < 2:806395‑M2/149‑28 (MQ=255) ggCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagac > 1:806395‑M2/1‑122 (MQ=255) tCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAc > 1:919111/1‑150 (MQ=255) tCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAc > 1:4019/1‑150 (MQ=255) gaacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGCCCATTTCGTCCAGGCCTGCAcc < 2:768087‑M1/61‑1 (MQ=255) tGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcc > 2:296522‑M2/1‑115 (MQ=255) aacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAtt > 2:1073782‑M1/89‑132 (MQ=255) aacggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCAtt < 1:1073782‑M1/44‑1 (MQ=255) ggATTTCCCGTTAGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCt < 1:226348/150‑1 (MQ=255) gATTTCCCGTTCGCCGAACTCGTTTAACGTAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCtt < 2:888829/150‑1 (MQ=255) cggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCtt > 2:525956‑M1/87‑150 (MQ=255) cggagacccctgcggctggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCtt > 2:352940‑M1/87‑150 (MQ=255) tttCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctgga < 1:989480‑M2/150‑40 (MQ=255) ttCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGt < 2:138174/150‑1 (MQ=255) gTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccattt < 1:327266‑M2/150‑46 (MQ=255) gTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGt > 2:840054/1‑150 (MQ=255) gTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGAAtatagcgctggccggcaaaggccagacgaatggcctggaccattt < 1:512411‑M2/150‑46 (MQ=255) cGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGc < 2:4019/150‑1 (MQ=255) ggACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtc > 2:1047571‑M2/1‑101 (MQ=255) tggaacggtttcagcgccaactgctgggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCa > 2:989480‑M1/71‑150 (MQ=255) gAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggcccatttcgtccaggcctgcacc < 2:768087‑M2/150‑62 (MQ=255) aaCGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatt < 1:1073782‑M2/132‑45 (MQ=255) aaCGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatt > 2:1073782‑M2/1‑88 (MQ=255) cGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtcaaggcctgcaccctt > 2:525956‑M2/1‑86 (MQ=255) cGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtcaaggcctgcaccctt > 2:352940‑M2/1‑86 (MQ=255) cGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCGCTGCCGGctac < 1:840054/150‑4 (MQ=255) cccTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc < 1:616004/74‑1 (MQ=255) cccTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGc > 2:616004/1‑74 (MQ=255) tggcagatttgcgtcctgatacgtcgctggcgggcaaatgcgtgacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGtgtg > 2:512411‑M1/47‑150 (MQ=255) gggcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTgg > 2:297332‑M1/46‑150 (MQ=255) tGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtcaaggcctgcacccttggtcaggtagccggca > 2:989480‑M2/1‑70 (MQ=255) gcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCCTTTCGTCAAGGCCt < 1:129997‑M1/56‑1 (MQ=255) gcgatctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCt > 2:129997‑M1/44‑99 (MQ=255) gAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGaa < 2:325775/150‑1 (MQ=255) tctgcgggctgatatagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGAACg > 1:193391‑M1/40‑150 (MQ=255) atagcgctggccggcaaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGAACGGGTCTTCCTCGca < 1:641622‑M1/124‑1 (MQ=255) tggcagatttgCGTCCTGATACGTCGCTGGCGGGCAAATGCGTGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtcaaggcctgcacccttggtcaggtagccggcagcgccggcctgcaacaagcgtgtg > 2:512411‑M2/6‑46 (MQ=255) gggCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtcaaggcctgcacccttggtcaggtagccggcagcgccggcctgcaacaagcgtgtgg > 2:297332‑M2/1‑45 (MQ=255) gCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccctttcgtcaaggcct < 1:129997‑M2/99‑57 (MQ=255) gCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtcaaggcct > 2:129997‑M2/1‑43 (MQ=255) gATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGAACGGGTCTTCCTCGCACACCGTCACCGc < 2:919111/150‑1 (MQ=255) tCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACtatagcgctggccggcaaaggccagacgaatggcctggaccatttcgtcaaggcctgcacccttggtcaggtagccggcagcgccggcctgcaacaagcgtgtggggaacg > 1:193391‑M2/1‑39 (MQ=255) aaaggccagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGAACGGGTCTTCCTCGCACACCGTCACCGCCAc < 1:507700‑M1/139‑1 (MQ=255) ggcccgacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCGTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGTAACGGGTCTTCCTCGCACACCGTCACCGCCACTAc > 2:299812‑M1/9‑150 (MQ=255) cagacTATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGAACGGGTCTTCCTCGCACACCGTCACCGCCACTACCtt > 2:327266‑M1/6‑150 (MQ=255) | GCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCACCCTTGGTCAGGTAGCCGGCAGCGCCGGCCTGCAACAAGCGTGTGGGGAACGGGTCTTCCTCGCACACCGTCACCGCCACTACCTT > NC_002947/4635283‑4635573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |