New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1851531	28 (0.660)	22 (0.520) +CTA	19/250	1.4	43.3%	coding (575/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase
	?	NC_002947	1851532 =	30 (0.690)					coding (576/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase

GAGAACCTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAG  >  NC_002947/1851386‑1851678                                                                                                                                                  |                                                                                                                                                    gagaACCTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctac                                                                                                                                                 >  1:578018‑M1/1‑146 (MQ=255)      ccTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGcgcc                                                                                                                                            >  2:80876/1‑150 (MQ=255)       cTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGcgccg                                                                                                                                           >  2:132815/1‑150 (MQ=255)       cTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCAGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcg                                                                                                                                           >  2:363587‑M1/1‑140 (MQ=255)           gcAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTAAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATatactcagcgccgc                                                                                                                                       >  2:235122‑M1/1‑136 (MQ=255)                  gCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTAAGACCCGCTCGCGCACCg                                                                                                                                >  2:853816/1‑150 (MQ=255)                      gtggCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgc                                                                                                                            >  1:284122‑M1/1‑125 (MQ=255)                          ccATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgg                                                                                                                        <  1:270464‑M1/150‑30 (MQ=255)                           cATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctggg                                                                                                                       >  1:565648‑M1/1‑120 (MQ=255)                           cATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTAt                                                                                                                       >  2:549999/1‑150 (MQ=255)                             tGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCg                                                                                                                     >  2:968174/1‑150 (MQ=255)                                 cgacgaCGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATca                                                                                                                 >  1:646657/1‑150 (MQ=255)                                  gacgacGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgat                                                                                                                <  1:664695‑M1/150‑38 (MQ=255)                                  gacgacGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgat                                                                                                                <  2:284122‑M1/150‑38 (MQ=255)                                     gacgTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATc                                                                                                             >  1:357596/1‑150 (MQ=255)                                      acgTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcaca                                                                                                            <  2:578018‑M1/150‑42 (MQ=255)                                           cgcgTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaag                                                                                                       >  1:589942‑M1/1‑104 (MQ=255)                                           cgcgTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTgg                                                                                                       <  2:357596/150‑1 (MQ=255)                                                ggCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCt                                                                                                  <  2:173029/150‑1 (MQ=255)                                                  cgcTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTgg                                                                                                <  2:279142/150‑1 (MQ=255)                                                   gcTGATCAAGCTGGCCGAACGCACGTGCGCAACCAGGACGGTGAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTAAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGa                                                                                               >  1:88634/1‑150 (MQ=255)                                                    cTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctacta                                                                                                                                               >  2:929684‑M1/1‑95 (MQ=255)                                                    cTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctacta                                                                                                                                               <  1:929684‑M1/101‑7 (MQ=255)                                                      gATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctgga                                                                                            >  2:31898‑M1/1‑93 (MQ=255)                                                        tCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGAcc                                                                                          <  1:80876/150‑1 (MQ=255)                                                                gCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTc                                                                                  <  2:847042/150‑1 (MQ=255)                                                                 ccGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTcc                                                                                 <  2:298942/150‑1 (MQ=255)                                                                    aaCGCACGTGCGCAATCCGGGCGGTAAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttcc                                                                              <  1:235122‑M1/150‑72 (MQ=255)                                                                        cACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCt                                                                          <  1:549999/150‑1 (MQ=255)                                                                         aCGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTg                                                                         <  1:132815/150‑1 (MQ=255)                                                                           gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGGCTGCGTGAAGCGCGTGAACTGTTCGCCATCTACGCGCCGCGCCCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGGCCTTCCGCTACCTGGa                                                                       >  1:444652/1‑150 (MQ=255)                                                                           gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGAc                                                                                           <  2:695243/130‑1 (MQ=255)                                                                           gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGAc                                                                                           >  1:695243/1‑130 (MQ=255)                                                                           gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGa                                                                       <  1:979989/150‑1 (MQ=255)                                                                               gcAATCCGGGAGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGccc                                                                   <  2:520133/150‑1 (MQ=255)                                                                                   tCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGAcc                                                               >  2:421051/1‑150 (MQ=255)                                                                                    ccGGGCGGTCAAGTCCGCCGATGACGAGACCAGACCACGGGGTTCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGTACCGCCTGGGTATCGATCACACCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCa                                                              <  2:88634/150‑1 (MQ=255)                                                                                                    gccgATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgaccagtacaagcagatc                                              >  2:295281‑M1/1‑47 (MQ=255)                                                                                                      cgATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCaa                                            <  1:241962/150‑1 (MQ=255)                                                                                                             gagaAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTg                                     >  1:146566/1‑150 (MQ=255)                                                                                                                aaaCGCCTGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgaccagtacaagcagatcgccaagctgttg                                  >  2:1092750‑M1/1‑35 (MQ=255)                                                                                                                       tGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgaccagtacaagcagatc                                              <  1:94577‑M1/131‑104 (MQ=255)                                                                                                                       tGCGTGTCGCGCGTGAAGTGTTCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgaccagtacaagcagatc                                              >  2:94577‑M1/1‑28 (MQ=255)                                                                                                                                     gAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCATCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAACCGTTTCATGTGCGGCGTCTGGATCGCGAg             >  1:517804/1‑150 (MQ=255)                                                                                                                                           ttCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgaccagtacaagcagatcgccaagctgttgcatgagc                           <  2:691931‑M1/130‑123 (MQ=255)                                                                                                                                           ttCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgaccagtacaagcagatcgccaagctgttgcatgagc                           >  1:691931‑M1/1‑8 (MQ=255)                                                                                                                                           ttCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgac                                                             >  1:889499‑M1/1‑8 (MQ=255)                                                                                                                                           ttCGACATctactacgcgccgctcgcgcaccgcctgggtatcgatcacatcaagtgggagctggaagacctgtccttccgctacctggagcccgac                                                             <  2:889499‑M1/96‑89 (MQ=255)                                                                                                                                            tCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTtca      >  2:1074109/1‑150 (MQ=255)                                                                                                                                             cGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTtcat     >  2:987494/1‑150 (MQ=255)                                                                                                                                               aCATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTtcatca   >  1:1081215/1‑150 (MQ=255)                                                                                                                                                cATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAg  <  2:1081215/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GAGAACCTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAG  >  NC_002947/1851386‑1851678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.