New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1851531	28 (0.660)	22 (0.520) +CTA	19/250	1.4	43.3%	coding (575/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase
	?	NC_002947	1851532 =	30 (0.690)					coding (576/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase

GTAGAGAACCTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAG  >  NC_002947/1851383‑1851678                                                                                                                                                      |                                                                                                                                                   gagaacctgcgcaagatgctggtggccatggtcgacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctac                                                                                                                                                    >  1:578018‑M2/150‑150 (MQ=255)       ctgcgcaagatgctggtggccatggtcgacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcagtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTAcgcg                                                                                                                                              >  2:363587‑M2/144‑150 (MQ=255)         ccTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGcgcc                                                                                                                                            >  2:80876/1‑150 (MQ=255)          cTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGcgccg                                                                                                                                           >  2:132815/1‑150 (MQ=255)           gcaagatgctggtggccatggtcgacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtaaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatataCTCAGcgccgc                                                                                                                                          >  2:235122‑M2/140‑150 (MQ=255)                     gCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTAAGACCCGCTCGCGCACCg                                                                                                                                >  2:853816/1‑150 (MQ=255)                      gtggccatggtcgacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGc                                                                                                                               >  1:284122‑M2/129‑150 (MQ=255)                          ccatggtcgacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTgg                                                                                                                           <  1:270464‑M2/26‑1 (MQ=255)                           catggtcgacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTggg                                                                                                                          >  1:565648‑M2/124‑150 (MQ=255)                              cATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTAt                                                                                                                       >  2:549999/1‑150 (MQ=255)                                tGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCg                                                                                                                     >  2:968174/1‑150 (MQ=255)                                  gacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGAt                                                                                                                   <  1:664695‑M2/34‑1 (MQ=255)                                  gacgacgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGAt                                                                                                                   <  2:284122‑M2/34‑1 (MQ=255)                                    cgacgaCGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATca                                                                                                                 >  1:646657/1‑150 (MQ=255)                                      acgtgcgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATcaca                                                                                                               <  2:578018‑M2/38‑1 (MQ=255)                                        gacgTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATc                                                                                                             >  1:357596/1‑150 (MQ=255)                                           cgcgtggcgctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAg                                                                                                          >  1:589942‑M2/108‑150 (MQ=255)                                              cgcgTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTgg                                                                                                       <  2:357596/150‑1 (MQ=255)                                                   ggCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCt                                                                                                  <  2:173029/150‑1 (MQ=255)                                                    ctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctacta                                                                                                                                                  >  2:929684‑M2/99‑101 (MQ=255)                                                    ctgatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctacta                                                                                                                                                  <  1:929684‑M2/3‑1 (MQ=255)                                                     cgcTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTgg                                                                                                <  2:279142/150‑1 (MQ=255)                                                      gcTGATCAAGCTGGCCGAACGCACGTGCGCAACCAGGACGGTGAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTAAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGa                                                                                               >  1:88634/1‑150 (MQ=255)                                                      gatcaagctggccgaacgcacgtgcgcaatccgggcggtcaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGa                                                                                               >  2:31898‑M2/97‑150 (MQ=255)                                                           tCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGAcc                                                                                          <  1:80876/150‑1 (MQ=255)                                                                   gCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTc                                                                                  <  2:847042/150‑1 (MQ=255)                                                                    ccGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTcc                                                                                 <  2:298942/150‑1 (MQ=255)                                                                    aacgcacgtgcgcaatccgggcggtaaagtccgccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTcc                                                                                 <  1:235122‑M2/68‑1 (MQ=255)                                                                           cACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCt                                                                          <  1:549999/150‑1 (MQ=255)                                                                            aCGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTg                                                                         <  1:132815/150‑1 (MQ=255)                                                                              gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGGCTGCGTGAAGCGCGTGAACTGTTCGCCATCTACGCGCCGCGCCCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGGCCTTCCGCTACCTGGa                                                                       >  1:444652/1‑150 (MQ=255)                                                                              gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGAc                                                                                           <  2:695243/130‑1 (MQ=255)                                                                              gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGAc                                                                                           >  1:695243/1‑130 (MQ=255)                                                                              gTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGa                                                                       <  1:979989/150‑1 (MQ=255)                                                                                  gcAATCCGGGAGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGccc                                                                   <  2:520133/150‑1 (MQ=255)                                                                                      tCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGAcc                                                               >  2:421051/1‑150 (MQ=255)                                                                                       ccGGGCGGTCAAGTCCGCCGATGACGAGACCAGACCACGGGGTTCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGTACCGCCTGGGTATCGATCACACCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCa                                                              <  2:88634/150‑1 (MQ=255)                                                                                                    gccgatgacgagaaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATc                                                 >  2:295281‑M2/51‑150 (MQ=255)                                                                                                         cgATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCaa                                            <  1:241962/150‑1 (MQ=255)                                                                                                                gagaAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTg                                     >  1:146566/1‑150 (MQ=255)                                                                                                                aaacgcctgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTg                                     >  2:1092750‑M2/39‑150 (MQ=255)                                                                                                                       tgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATc                                                 <  1:94577‑M2/100‑1 (MQ=255)                                                                                                                       tgcgtgtcgcgcgtgaagtgttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATc                                                 >  2:94577‑M2/32‑131 (MQ=255)                                                                                                                                        gAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCATCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAACCGTTTCATGTGCGGCGTCTGGATCGCGAg             >  1:517804/1‑150 (MQ=255)                                                                                                                                           ttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGAc                                                                >  1:889499‑M2/12‑96 (MQ=255)                                                                                                                                           ttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGAc                                                                <  2:889499‑M2/85‑1 (MQ=255)                                                                                                                                           ttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAgc                              <  2:691931‑M2/119‑1 (MQ=255)                                                                                                                                           ttcgacatctaCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAgc                              >  1:691931‑M2/12‑130 (MQ=255)                                                                                                                                               tCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTtca      >  2:1074109/1‑150 (MQ=255)                                                                                                                                                cGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTtcat     >  2:987494/1‑150 (MQ=255)                                                                                                                                                  aCATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTtcatca   >  1:1081215/1‑150 (MQ=255)                                                                                                                                                   cATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAg  <  2:1081215/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GTAGAGAACCTGCGCAAGATGCTGGTGGCCATGGTCGACGACGTGCGCGTGGCGCTGATCAAGCTGGCCGAACGCACGTGCGCAATCCGGGCGGTCAAGTCCGCCGATGACGAGAAACGCCTGCGTGTCGCGCGTGAAGTGTTCGACATCTACGCGCCGCTCGCGCACCGCCTGGGTATCGATCACATCAAGTGGGAGCTGGAAGACCTGTCCTTCCGCTACCTGGAGCCCGACCAGTACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAG  >  NC_002947/1851383‑1851678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.