New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5307722 =	NA (NA)	28 (0.680)	18/248	1.5	76.8%	intergenic (‑118/+14)	PP_5SG/PP_23SG	5S ribosomal RNA/23S ribosomal RNA
	?	NC_002947	5307725 =	9 (0.210)					intergenic (‑121/+11)	PP_5SG/PP_23SG	5S ribosomal RNA/23S ribosomal RNA

TCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAA  >  NC_002947/5307580‑5307765                                                                                                                                               |                                             tCCAATTCTCTATGGTCGTAAAGAAATTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGa                                      <  1:955264/150‑1 (MQ=17)       gCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCtt                                <  1:992530/150‑1 (MQ=32)           tATGGTCGTGAAGAAATTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCTTGGgt                            <  2:1019016/150‑1 (MQ=17)             tGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCTTGGgtgt                          <  2:559257/150‑1 (MQ=32)                     aaGAAATTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCTTGGGTGTTATATGGt                  >  1:929714/1‑150 (MQ=32)                          aTTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCTTGGGTGTTATATGGTCAAGc             <  1:233729/150‑1 (MQ=32)                                     ggAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCaa  >  1:524847/1‑150 (MQ=11)                                                         ccAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGC‑TACGCAGATTgtg                                 <  1:946862/99‑3 (MQ=1)                                                         ccAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGC‑TACGCAGATTgtg                                 >  2:946862/1‑97 (MQ=1)                                                                                                                                               |                                             TCCAATGCTCTATGGTCGTCAAGAAATTCTGTTGCCGGAATGTCCAGATGGACAGCCCAGCGAATTCGGATATGCGATATTTGCGAAGCTCTTGTGTAAAGCACGAATTTTCGGGTCTTTCGTCTTCACCACCACAATCTGCGTA‑GCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAA  >  NC_002947/5307580‑5307765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.