| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4852633 | 16 (0.610) | 6 (0.240) | 6/256 | 2.2 | 27.3% | intergenic (‑259/+38) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| ? | NC_002947 | = 4852645 | 17 (0.690) | intergenic (‑271/+26) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator | |||||
CCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4852558‑4852633‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgccGCTGACAACAGTGGCGGTTTTTTTTGCGGAGATTTCAACCCAGTTGCGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTC < NC_002947/4852645‑4852535 CCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCGCTGACAACAGTGGCGGT > 1:93732/1‑94CCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCGCTGACAACAGTGGCGGT < 2:93732/94‑1 ATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTTTTTGCGGAGATTTCAACCCAGTTGCGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTC > 1:221800/1‑133 ATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTTTTTGCGGAGATTTCAACCCAGTTGCGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTC < 2:221800/133‑1 CGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTTTTTGCGGAGATTTCAACCCAGTTGCGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTC > 1:456504/1‑95 CGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTTTTTGCGGAGATTTCAACCCAGTTGCGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTC < 2:456504/95‑1 CCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4852558‑4852633‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgccGCTGACAACAGTGGCGGTTTTTTTTGCGGAGATTTCAACCCAGTTGCGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTC < NC_002947/4852645‑4852535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |