| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4852633 | 16 (0.610) | 6 (0.240) | 6/256 | 2.2 | 27.3% | intergenic (‑259/+38) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| ? | NC_002947 | = 4852645 | 17 (0.690) | intergenic (‑271/+26) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator | |||||
CGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGACTGCTCTGCTCGACCTTGCGCACTGCGTCGTTCAGCGCAGCGG > NC_002947/4852489‑4852780 | cgcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACtgt > 2:562928/1‑150 (MQ=255) gcagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTg > 2:194049/1‑150 (MQ=255) cagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTg > 2:524922/1‑150 (MQ=255) tgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGaa > 2:217105/1‑150 (MQ=255) cGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACg < 1:217105/150‑1 (MQ=255) gCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATACCCTTAGAACGGCa > 2:391171/1‑150 (MQ=255) gAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCGCTGACAACAGTggcggtttttttttgcggagat > 1:221800‑M2/1‑111 (MQ=255) gAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCGCTGACAACAGTggcggtttttttttgcggagat < 2:221800‑M2/133‑23 (MQ=255) gcgcCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCAACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGACATCTTGAAGCCCGGCGGCAGCTg > 2:228335/1‑150 (MQ=255) cccTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCgctgacaacagtggcggt < 2:93732‑M1/94‑19 (MQ=255) cccTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCgctgacaacagtggcggt > 1:93732‑M1/1‑76 (MQ=255) gcgACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCcggcgg > 2:362936/1‑150 (MQ=255) gACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCGCTGACAACAGTggcggttttttttgcg > 1:456504‑M2/1‑79 (MQ=255) gACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCGCTGACAACAGTggcggttttttttgcg < 2:456504‑M2/95‑17 (MQ=255) gACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTc < 1:362936/150‑1 (MQ=255) cacaAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGACATGCCCTTAGCACGGCATCTTGAAGCACGGCGGCAGCTTCATGCCGGCGGACATCCCGCCCATCtttt > 2:48304/1‑150 (MQ=255) aTCTCCGCAAAAAAAAACCGCCactgttgtcagcggcggttttttttgcggagatttcaacccagttgcggtctgcttttttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccgggatttc > 1:221800‑M1/1‑22 (MQ=255) aTCTCCGCAAAAAAAAACCGCCactgttgtcagcggcggttttttttgcggagatttcaacccagttgcggtctgcttttttgtgggagcggccttgtgtcgcgaaaggggcgcgaagcggccccgggatttc < 2:221800‑M1/133‑112 (MQ=255) cgcaaaaaaaaaCCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGACCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGACTGCTCTGCTCGACCTTGCGCACTGcgtc < 1:524922/146‑1 (MQ=255) cGC‑AAAAAAAACCGCCactgttgtcagcggcggttttttttgcggagatttcaacccagttgcggtctgcttttttgtgggagcggccttgtgtc > 1:456504‑M1/1‑16 (MQ=255) cGC‑AAAAAAAACCGCCactgttgtcagcggcggttttttttgcggagatttcaacccagttgcggtctgcttttttgtgggagcggccttgtgtc < 2:456504‑M1/95‑80 (MQ=255) gC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGa > 2:162757/1‑119 (MQ=255) gC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGa < 1:162757/119‑1 (MQ=255) aaaaaaaaCCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGACTGCTCTGCTCGACCTTGCGCACTGCGTCGTTc < 1:48304/150‑1 (MQ=255) aaaaaaaCCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGACTGCTCTGCTCGACCTTGCGCACTGCGTCGTTca < 1:251161/150‑1 (MQ=255) aCCGCCACTGTTGTCAGCggcggttttttttgcggagatttcaacccagttgcggtctgcttttttgtgggagcggccttgtgtcgcgaaaggg > 1:93732‑M2/1‑18 (MQ=255) aCCGCCACTGTTGTCAGCggcggttttttttgcggagatttcaacccagttgcggtctgcttttttgtgggagcggccttgtgtcgcgaaaggg < 2:93732‑M2/94‑77 (MQ=255) gCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGACTGCTCTGCTCGACCTTGCGCACTGCGTCGTTCAGCGCAGCgg > 2:310270/1‑150 (MQ=255) | CGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAGCTGCATGCCGGCGGTCATGCCGCCCATCTTTTCCTGACTGCTCTGCTCGACCTTGCGCACTGCGTCGTTCAGCGCAGCGG > NC_002947/4852489‑4852780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |