New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6000959 =	34 (1.290)	6 (0.290)	5/214	2.1	23.7%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6001053 =	12 (0.580)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

CGCCTTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6001137‑6000959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  NC_002947/6001053‑6001201                                                                                                                                                                                                                                                                                                                                           CGCCTTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTT                                                                                                                                                                                    >  2:84337/1‑150  GCCTTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTG                                                                                                                                                                                   >  1:18575/1‑150     TTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACTGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAG                                                                                                                                                                                <  2:66448/150‑1     TTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAG                                                                                                                                                                                >  1:526042/1‑150          TGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTAACACCGC‑GCGCAATCATCTAGGGTTGTGTTGTAAGGACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCG                                                                                                                                                                           >  1:11890/1‑150           GCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTAACGCGAGCTCGCTG‑GCCTGATGGTTGTGTTGTAAGTAGTGTCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGG                                                                                                                                                                          <  1:624785/150‑1            tccgCAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGG                                                                                                                                                                         <  2:339031/146‑1             GGACAGCGTTCGATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGT                                                                                                                                                                        <  2:71428/150‑1              GACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTT                                                                                                                                                                       <  2:576715/150‑1                      TCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCG                                                                                                                                                               >  2:356435/1‑150                        TATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                             <  1:84337/150‑1                           GAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                                                                                          <  2:526042/150‑1                              TCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                       <  2:180941/150‑1                              TCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                       >  2:475451/1‑150                                                   GCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                                                                                          <  2:244745/126‑1                                                   GCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAG                                                                                                                                                          >  1:244745/1‑126                                                                CTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGG                                                                                                                                                                         <  1:347684/99‑1                                                                CTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGG                                                                                                                                                                         >  2:347684/1‑99                                                                                                         CCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCG                                                                             >  1:555272/1‑150                                                                                                            GCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAG                                                                          >  2:501497/1‑150                                                                                                            GCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAG                                                                          >  2:382955/1‑150                                                                                                                 TACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAG                                                                     <  1:501497/150‑1                                                                                                                  ACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTA                                                                                                                                                   >  2:332666/1‑71                                                                                                                  ACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTA                                                                                                                                                   <  1:332666/71‑1                                                                                                                                                       TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGC                               >  1:562490/1‑150                                                                                                                                                              GCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGT                        >  2:434633/1‑150                                                                                                                                                               CGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTC                       <  2:209202/150‑1                                                                                                                                                                       CCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGTAGGCGCGCGCACCTCGCTCTTCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGC               <  2:555272/150‑1                                                                                                                                                                             AAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGA         <  2:624785/150‑1                                                                                                                                                                             AAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGA         <  1:382955/150‑1                                                                                                                                                                             AAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGA         <  1:292662/150‑1                                                                                                                                                                                  GCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTG          <  2:492245/144‑1                                                                                                                                                                                  GCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTG          >  1:492245/1‑144                                                                                                                                                                                    CAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  1:639656/1‑150                                                                                                                                                                                                                                                                                                                                           CGCCTTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCG‑GGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6001137‑6000959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  NC_002947/6001053‑6001201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.