| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6000959 = | 34 (1.290) | 6 (0.290) | 5/214 | 2.1 | 23.7% | intergenic (+10/+99) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
| ? | NC_002947 | 6001053 = | 12 (0.580) | intergenic (+104/+5) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase | |||||
ATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA > NC_002947/6000911‑6001201 | atcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 2:405850/143‑1 (MQ=255)atcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa > 1:405850/1‑143 (MQ=255)atcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTa > 1:377124/1‑150 (MQ=255) tcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCCACAGGTAGTGCACCGCCTGAGAGGGCTCTGGACAGTCCCTATGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTac > 1:463707/1‑150 (MQ=38) aagaagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaa > 2:11890/1‑150 (MQ=255) gaagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaaca > 2:18575/1‑150 (MQ=255) gttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 1:258868/117‑1 (MQ=255) gttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa > 2:258868/1‑117 (MQ=255) acaAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTGCAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTgg < 2:463707/150‑1 (MQ=255) cGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCgg > 1:475451/1‑150 (MQ=255) GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGa > 2:475451‑M1/1‑150 (MQ=255) GGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGa < 2:180941‑M1/150‑1 (MQ=255) CTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑cgc > 1:244745‑M1/1‑126 (MQ=255) CTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑cgc < 2:244745‑M1/126‑1 (MQ=255) CTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTc < 2:526042‑M1/150‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATa < 1:84337‑M1/150‑1 (MQ=255) CGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGa > 2:356435‑M1/1‑150 (MQ=255) AACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTc < 2:576715‑M1/150‑1 (MQ=255) ACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATCGAACGCTGTcc < 2:71428‑M1/150‑1 (MQ=255) cccgctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCg > 1:555272‑M2/77‑150 (MQ=255) CCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAg < 1:347684‑M1/99‑1 (MQ=255) CCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAg > 2:347684‑M1/1‑99 (MQ=255) CCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAAcgctgcgga < 2:339031‑M1/150‑5 (MQ=255) CCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGACACTACTTACAACACAACCATCAGGC‑CAGCGAGCTCGCGTTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGc < 1:624785‑M1/150‑1 (MQ=255) CGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTCCTTACAACACAACCCTAGATGATTGCGC‑GCGGTGTTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCa > 1:11890‑M1/1‑150 (MQ=255) gctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAg > 2:501497‑M2/74‑150 (MQ=255) gctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAg > 2:382955‑M2/74‑150 (MQ=255) CTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGaa > 1:526042‑M1/1‑150 (MQ=255) CTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCAGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGaa < 2:66448‑M1/150‑1 (MQ=255) tacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAg < 1:501497‑M2/82‑1 (MQ=255) acaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTa < 1:332666‑M2/4‑1 (MQ=255) acaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccAGTa > 2:332666‑M2/68‑71 (MQ=255) CAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGgc > 1:18575‑M1/1‑150 (MQ=255) AAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGgcg > 2:84337‑M1/1‑150 (MQ=255) agtagtGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGgcgc < 1:180941/150‑1 (MQ=255) tgAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGa < 2:599777/150‑1 (MQ=255) tgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGc > 1:562490‑M2/31‑150 (MQ=255) gcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGt > 2:434633‑M2/24‑150 (MQ=255) cgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTc < 2:209202‑M2/128‑1 (MQ=255) cccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGTAGGCGCGCGCACCTCGCTCTTCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGc < 2:555272‑M2/136‑1 (MQ=255) aagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGa < 2:624785‑M2/142‑1 (MQ=255) aagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGa < 1:382955‑M2/142‑1 (MQ=255) aagaggccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGa < 1:292662‑M2/142‑1 (MQ=255) gccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTg < 2:492245‑M2/141‑1 (MQ=255) gccAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTg > 1:492245‑M2/4‑144 (MQ=255) cAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGaa > 1:639656‑M2/2‑150 (MQ=255) | ATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCC‑CGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA > NC_002947/6000911‑6001201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |