New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	86750 =	31 (1.170)	8 (0.340)	6/242	2.1	22.4%	intergenic (‑33/+112)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	86841 =	28 (1.200)					intergenic (‑124/+21)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein

TAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCTTGGCCGCTTCATCGAAGCT  >  NC_002947/86700‑86984                                                                                                                                              |                                                                                                                                                tAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGgtgtgt                                                                                                                                         >  1:243467/1‑150 (MQ=255)       gagGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCttt                                                                                                                                   <  2:640126/150‑1 (MQ=255)              gggaTGGGTGAGCCACACTCCTTAAGGGGTCGCACAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCGTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGAt                                                                                                                            <  2:296045/147‑1 (MQ=25)                cATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTa                                                                                                                          <  2:605993/150‑1 (MQ=255)                    ggTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACa                                                                                                                        <  1:216724/148‑1 (MQ=255)                    ggTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACa                                                                                                                        >  2:216724/1‑148 (MQ=255)                       tATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTg                                                                                                                   <  2:182864/150‑1 (MQ=255)                            acaATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTtgtg                                                                                                                                <  1:633774/132‑1 (MQ=255)                            acaATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTtgtg                                                                                                                                >  2:633774/1‑132 (MQ=255)                                    tAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCt                                                                                                      >  2:204067/1‑150 (MQ=255)                                        gggTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAg                                                                                                  <  2:467976/150‑1 (MQ=255)                                                aaGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATccc                                                                                          <  1:497367/150‑1 (MQ=255)                                                         gggagcgggcgcgcccgcgaacaccggcaaagccggtgccaagcaacgcgttggctttttcgcgggcatgcccgctcccacagggCTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCt                                                                                 >  1:602688‑M2/86‑150 (MQ=255)                                                          GGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCtt                                                                                >  1:204067‑M1/1‑150 (MQ=255)                                                                GGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTggtggt                                                                          >  2:243467‑M1/1‑150 (MQ=255)                                                                       ccgcgaacaccggcaaagccggtgccaagcaacgcgttggctttttcgcgggcatgcccgctcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCttt                                                                                                              <  2:598114‑M2/36‑1 (MQ=255)                                                                       ccgcgaacaccggcaaagccggtgccaagcaacgcgttggctttttcgcgggcatgcccgctcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCttt                                                                                                              >  1:598114‑M2/72‑107 (MQ=255)                                                                       ccgcgaacaccggcaaagccggtgccaagcaacgcgttggctttttcgcgggcatgcccgctcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATc                                                                                            <  1:276651‑M2/54‑1 (MQ=255)                                                                       ccgcgaacaccggcaaagccggtgccaagcaacgcgttggctttttcgcgggcatgcccgctcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATc                                                                                            >  2:276651‑M2/72‑125 (MQ=255)                                                                       ccgcgaacaccggcaaagccggtgccaagcaacgcgttggctttttcgcgggcatgcccgctcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTAACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCg                                                                   >  1:137535‑M2/72‑150 (MQ=255)                                                                       ccGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCg                                                                   >  1:597121/1‑150 (MQ=255)                                                                        cgcgaacaccggcaaagccggtgccaagcaacgcgttggctttttcgcgggcatgcccgctcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCgg                                                                  >  1:490803‑M2/71‑150 (MQ=255)                                                                        cgcgAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACa                                                                                                                        <  2:137074/96‑1 (MQ=255)                                                                        cgcgAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACa                                                                                                                        >  1:137074/1‑96 (MQ=255)                                                                        cgcgAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCgg                                                                  >  1:164557/1‑150 (MQ=255)                                                                                aGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAaccac                                                          <  2:642328/150‑1 (MQ=255)                                                                                 gCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAaccacc                                                         >  1:465474/1‑150 (MQ=255)                                                                                     aCGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAg                                                                                                  <  1:571415/105‑1 (MQ=255)                                                                                     aCGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAg                                                                                                  >  2:571415/1‑105 (MQ=255)                                                                                                  cACCGGCTTGGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGa                                        <  2:456828/150‑1 (MQ=255)                                                                                                   aCCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGAt                                       >  1:60910/1‑150 (MQ=255)                                                                                                     cGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACa                                                                                                                        >  2:536807/1‑67 (MQ=255)                                                                                                     cGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACa                                                                                                                        <  1:536807/67‑1 (MQ=255)                                                                                                              cGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCAcc                            <  2:597121/150‑1 (MQ=255)                                                                                                                  gggagcgGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTggtggt                                                                          <  2:431759/96‑1 (MQ=255)                                                                                                                  gggagcgGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTggtggt                                                                          >  1:431759/5‑100 (MQ=255)                                                                                                                      gcgGGCTCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCtt                    <  1:252153/150‑1 (MQ=255)                                                                                                                          gcatgcccgctcccacagggCTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCTTGGcc                <  2:602688‑M2/130‑1 (MQ=255)                                                                                                                              gcccgctcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCTTGGCCGCtt            >  2:625613‑M2/17‑150 (MQ=255)                                                                                                                                    tcccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCTTGGCCGCTTCATCGa      <  1:625613‑M2/140‑1 (MQ=255)                                                                                                                                     cccacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACTGTTCAGGATGCGCTTTCACCCAGGCCTTGGCCGCTTCATCGaa     <  2:465474‑M2/141‑1 (MQ=255)                                                                                                                                       cacagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCATTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCTTGGCCGCTTCATCGAAGc   >  1:386731‑M2/8‑150 (MQ=255)                                                                                                                                        acagggTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCTTGGCCGCTTCATCGAAGCt  >  1:230615‑M2/7‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                TAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCCATCGGCCTTGGTGGTAACTCCGGCCAACCACCCATCCAACCGTTCAGGATGCGCTTTCACCCAGGCCTTGGCCGCTTCATCGAAGCT  >  NC_002947/86700‑86984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.