| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 401317 = | 48 (0.540) | 12 (0.150) | 7/220 | NT | 17.8% | coding (900/1059 nt) | PP_0334 | transposase |
| ? | NC_002947 | 401373 = | 68 (0.860) | coding (956/1059 nt) | PP_0334 | transposase | |||||
GTCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/401477‑401317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGC > NC_002947/401373‑401521 GTCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GA < 2:1878572/150‑1 TCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAG > 1:645554/1‑150 AGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGC > 1:391160/1‑150 AGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGC < 2:487260/150‑1 AGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATGCGCAGATTTCGATTAGCCAGCATGATCGCAGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGG > 1:1966446/1‑150 AGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCGAAACGCGGGATAGCCAGCGCAA‑GAGGCGG < 1:1270598/150‑1 TCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGAT > 1:1714259/1‑150 ATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCA > 2:1522072/1‑150 GCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GA > 1:3714/1‑133 GCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GA < 2:3714/133‑1 AACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GA > 2:1824116/1‑85 AACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GA < 1:1824116/85‑1 ACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGG > 1:2089346/1‑86 ACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGG < 2:2089346/86‑1 TTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAA > 2:664067/1‑150 TCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAA > 2:291271/1‑150 GATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAA > 1:1140039/1‑141 GATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAA < 2:1140039/141‑1 CTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGGAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCC‑GGAACGTACGCGAGCAGGTTTACCAACGCAAACCGAACGAGAAACCGGAGACGGCTA > 1:1353478/1‑150 GCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCC > 1:1102483/1‑150 CCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTG < 2:318272/70‑1 CCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTG > 1:318272/1‑70 GCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCA‑TCTGGCTGATCGAAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTG > 2:1625367/1‑150 CCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGA < 1:664067/150‑1 CCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCA‑TCTGGCTGATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGA > 1:1484874/1‑150 CTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGA < 1:291271/150‑1 CTTGCGCCCAAGGCGGGATAGCCAGCGCAAGGAGGCGGCGATCAGGC < 1:1097723/47‑1 CTTGCGCCCAAGGCGGGATAGCCAGCGCAAGGAGGCGGCGATCAGGC > 2:1097723/1‑47 GAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATGTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCT > 1:1508612/1‑150 GCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCT < 2:1090263/112‑1 GCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCT > 1:1090263/1‑112 GCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAC < 2:2241893/150‑1 GCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAC < 1:2106504/150‑1 GCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAC < 1:1671421/150‑1 CGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACC < 1:606238/150‑1 CGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACC < 2:1625677/150‑1 TCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACTCAACCCAAACCAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCCTGGAATGCCACCGGGGCGCTAGGCGCTCCAACCCCT < 1:1999070/150‑1 TCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCT < 1:487260/150‑1 AGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGC < 1:87730/150‑1 AGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCCGATAATGCTACCGGGGCGCTAGGCGCTCCAACCCCTGa > 2:1999070/1‑149 AGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA < 1:2392102/46‑1 AGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA > 2:2392102/1‑46 AGGCCGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGC < 1:224976/150‑1 GTCAGAGGCTCATAGCCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA‑GAGGCGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/401477‑401317‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGC > NC_002947/401373‑401521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |