New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 401317 =48 (0.540)12 (0.150) 7/220 NT 17.8% coding (900/1059 nt) PP_0334 transposase
?NC_002947 401373 = 68 (0.860)coding (956/1059 nt) PP_0334 transposase

Only 100 of 123 total aligned reads displayed.

ACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGC  >  NC_002947/401238‑401521
                                                                                                                                       |                                                                                                                                                     
tttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagattccgatcagccagaTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGaa                                                                                                                                         >  2:664067‑M1/80‑150 (MQ=255)
      ttcggtttgcgttggtaaacctgatcgctctgtaacagggcccagataatccgcagatttcgattagccagccTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATc                                                                                                                                            >  1:1140039‑M1/74‑141 (MQ=255)
              aGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATc                                                                                                                           <  2:805853/150‑1 (MQ=11)
               gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCt                                                                                                                          <  2:1496836/150‑1 (MQ=31)
               gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCt                                                                                                                          <  2:1571763/150‑1 (MQ=31)
               gCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCt                                                                                                                          >  1:1977070/1‑150 (MQ=31)
                ccTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTg                                                                                                                         >  1:749186/1‑150 (MQ=32)
                ccTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTg                                                                                                                         >  1:121841/1‑150 (MQ=32)
                 cTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTgg                                                                                                                        <  2:2268511/150‑1 (MQ=32)
                 atgatgaTCCAGGGCGCGCATTCCGTCTTGAGCCCGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCCGGCTAATCGAAATCTGCGGATTATCTgg                                                                                                                        >  2:224976/2‑150 (MQ=17)
                   gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGGCCTCTGACGATTATCTGTGc                                                                                                                      >  2:1714259/1‑150 (MQ=11)
                   gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGc                                                                                                                      >  1:544805/1‑150 (MQ=32)
                   gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGc                                                                                                                      >  2:1411311/1‑150 (MQ=32)
                   gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGc                                                                                                                      >  1:2048233/1‑150 (MQ=32)
                   gatgaaCCAGGGCGCGCAGGCCGGCTGTAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGc                                                                                                                      >  2:1842580/1‑150 (MQ=11)
                    atgctCCAGGGCGCGCATTACGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCTCGCCTTGGGCGCAAGGAGCCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGcc                                                                                                                     <  2:469189/150‑1 (MQ=255)
                        tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGt                                                                                                                 >  1:1625677/1‑150 (MQ=32)
                        tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGt                                                                                                                 <  2:544805/150‑1 (MQ=32)
                           aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTAc                                                                                                              >  2:87730/1‑150 (MQ=32)
                            gggCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACa                                                                                                             <  1:2182655/150‑1 (MQ=32)
                              gcgcgcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTCTCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGACATGTGCGGATTAGCTGGGCCCTGTTACaga                                                                                                           >  1:1328901/1‑150 (MQ=255)
                                     ttCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCa                                                                                                   >  1:1522072/1‑150 (MQ=32)
                                          tCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGttt                                                                                              >  2:1634991/1‑150 (MQ=32)
                                            ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTTGGCGCAAGGAGGCGGCGATCAGTCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTAc                                                                                            >  1:1294312/1‑150 (MQ=17)
                                            ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTAc                                                                                            >  1:967813/1‑150 (MQ=32)
                                                      tAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCaagc                                                                                  <  2:121841/150‑3 (MQ=17)
                                                          gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAgg                                                                                                 >  2:1532013/1‑131 (MQ=33)
                                                          gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAgg                                                                                                 <  1:1532013/131‑1 (MQ=33)
                                                          gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGACGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACcgaa                                                                              <  2:1185061/150‑1 (MQ=17)
                                                            cTGATTCCTAGCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACcgaacg                                                                            >  2:645554/1‑150 (MQ=17)
                                                            cTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACcgaacg                                                                            >  2:723214/1‑150 (MQ=32)
                                                                ttcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatca‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGaaaaa                                                                       >  2:664067‑M2/72‑150 (MQ=255)
                                                                ttCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGaaaa                                                                        >  2:2106504/1‑150 (MQ=32)
                                                                 tcgattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGaaaaa                                                                       >  2:291271‑M2/71‑150 (MQ=255)
                                                                 tCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAAc                                                                                        >  1:1816057/1‑133 (MQ=33)
                                                                   gattagccagcctgatcgccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACcgaa                                                                              <  2:1140039‑M2/73‑1 (MQ=255)
                                                                    gATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACcgaac                                                                             >  2:864211/1‑141 (MQ=32)
                                                                    gATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACcgaac                                                                             <  1:864211/141‑1 (MQ=32)
                                                                    gATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg                                                                    >  2:2123790/1‑150 (MQ=32)
                                                                      tCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGGTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGa                                                                  <  2:855836/150‑1 (MQ=17)
                                                                         gCCAGATGATCTCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggc                                                               >  2:33898/1‑150 (MQ=17)
                                                                         gCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggc                                                               >  1:2241893/1‑150 (MQ=32)
                                                                          ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcg                                                              >  2:1039788/1‑150 (MQ=32)
                                                                          ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGAGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcg                                                              >  1:793563/1‑150 (MQ=17)
                                                                           cAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTgg                                                                                                                        >  2:1832791/1‑92 (MQ=34)
                                                                           cAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTgg                                                                                                                        <  1:1832791/92‑1 (MQ=33)
                                                                           cAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcgg                                                             <  2:1977070/150‑1 (MQ=32)
                                                                              ctgatcgccgcctccttgcgcccaaggcgggatagccagcggaagaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCC‑GGAACGTACGCGAGCAGGTTTACCAACGCAAACCGAACGAGAAACCGGAGACGGCTa                                                          >  1:1353478‑M2/58‑150 (MQ=255)
                                                                               TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTAt                                                         >  2:1522072‑M1/1‑150 (MQ=255)
                                                                                 ATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGa                                                       >  1:1714259‑M1/1‑150 (MQ=255)
                                                                                    gccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGcc                                                    >  1:1102483‑M2/52‑150 (MQ=255)
                                                                                     ccgcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaGGCTGGCTAATCGAAATCTg                                                                                                                                    <  2:318272‑M2/20‑1 (MQ=255)
                                                                                     CCGCCTCTTGCGCTGGCTATCCCGCGTTTCGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCct                                                   <  1:1270598‑M1/150‑1 (MQ=255)
                                                                                       gcctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatca‑TCTGGCTGATCGAAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTg                                                >  2:1625367‑M2/49‑150 (MQ=255)
                                                                                       GCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct                                                 >  1:391160‑M1/1‑150 (MQ=255)
                                                                                       GCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct                                                 <  2:487260‑M1/150‑1 (MQ=255)
                                                                                        cctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatca‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                               <  1:664067‑M2/103‑1 (MQ=255)
                                                                                        cctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatca‑TCTGGCTGATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                               >  1:1484874‑M2/48‑150 (MQ=255)
                                                                                        CCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGt                                                                                                                 <  2:2089346‑M1/86‑1 (MQ=255)
                                                                                        CCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGt                                                                                                                 >  1:2089346‑M1/1‑86 (MQ=255)
                                                                                         ctccttgcgcccaaggcgggatagccagcgcaagaggcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                               <  1:291271‑M2/104‑1 (MQ=255)
                                                                                         CTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa                                               >  1:645554‑M1/1‑150 (MQ=255)
                                                                                          TCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGtt                                                                                                                <  1:1824116‑M1/85‑1 (MQ=255)
                                                                                          TCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGtt                                                                                                                >  2:1824116‑M1/1‑85 (MQ=255)
                                                                                          TCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggc                                                               <  2:3714‑M1/133‑1 (MQ=255)
                                                                                          TCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggc                                                               >  1:3714‑M1/1‑133 (MQ=255)
                                                                                          TCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAc                                              <  2:1878572‑M1/150‑1 (MQ=255)
                                                                                           cttgcgcccaaggcgggatagccagcgcaaggaggcggcgatcaggc                                                                                                                                                     >  2:1097723‑M2/45‑47 (MQ=255)
                                                                                           cttgcgcccaaggcgggatagccagcgcaaggaggcggcgatcaggc                                                                                                                                                     <  1:1097723‑M2/3‑1 (MQ=255)
                                                                                                 cTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg                                       <  1:33898/150‑1 (MQ=32)
                                                                                                   ggCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACTCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGt                                     >  1:1653309/1‑150 (MQ=17)
                                                                                                     cTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTaa                                   <  2:2374174/150‑1 (MQ=32)
                                                                                                      tATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt                                  <  1:740880/150‑1 (MQ=32)
                                                                                                        tCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGc                                <  1:2311513/150‑1 (MQ=32)
                                                                                                          ccGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCa                              >  1:1804871/1‑150 (MQ=32)
                                                                                                               ttGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTaa                                   >  1:286808/1‑140 (MQ=33)
                                                                                                               ttGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTaa                                   <  2:286808/140‑1 (MQ=33)
                                                                                                               ttGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCggg                         <  2:1804871/150‑1 (MQ=32)
                                                                                                                 gggCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGgc                       >  2:2390825/1‑150 (MQ=32)
                                                                                                                     gcAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt                                  <  2:470878/135‑1 (MQ=33)
                                                                                                                     gcAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAAt                                  >  1:470878/1‑135 (MQ=33)
                                                                                                                      cAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAg                  <  2:507040/150‑1 (MQ=32)
                                                                                                                       aaGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTgg                                                                                                                        <  2:200571/48‑1 (MQ=38)
                                                                                                                       aaGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTgg                                                                                                                        >  1:200571/1‑48 (MQ=38)
                                                                                                                       aaGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAAc                                          <  1:1038106/125‑1 (MQ=32)
                                                                                                                       aaGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAAc                                          >  2:1038106/1‑125 (MQ=32)
                                                                                                                          gaggcggcgatca‑TCTGGCTGATCGGAATCTGCGGATTATGTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCt             >  1:1508612‑M2/14‑150 (MQ=255)
                                                                                                                             gcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct                                                 >  1:1090263‑M2/11‑112 (MQ=255)
                                                                                                                             gcggcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCctct                                                 <  2:1090263‑M2/102‑1 (MQ=255)
                                                                                                                                gcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAc        <  2:2241893‑M2/143‑1 (MQ=255)
                                                                                                                                gcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAc        <  1:1671421‑M2/143‑1 (MQ=255)
                                                                                                                                gcgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAc        <  1:2106504‑M2/143‑1 (MQ=255)
                                                                                                                                 cgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAcc       <  2:1625677‑M2/144‑1 (MQ=255)
                                                                                                                                 cgatcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAcc       <  1:606238‑M2/144‑1 (MQ=255)
                                                                                                                                    tcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACTCAACCCAAACCAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCCTGGAATGCCACCGGGGCGCTAGGCGCTCCAACCCCt    <  1:1999070‑M2/147‑1 (MQ=255)
                                                                                                                                    tcaGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCt    <  1:487260‑M2/147‑1 (MQ=255)
                                                                                                                                      aGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACaga                                                                                                           >  2:2392102‑M2/2‑46 (MQ=255)
                                                                                                                                      aGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACaga                                                                                                           <  1:2392102‑M2/45‑1 (MQ=255)
                                                                                                                                      aGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCCGATAATGCTACCGGGGCGCTAGGCGCTCCAACCCCtga  >  2:1999070‑M2/2‑149 (MQ=255)
                                                                                                                                      aGGCCGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGc  <  1:224976‑M2/149‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                                     
ACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA‑GCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCTGC  >  NC_002947/401238‑401521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.