| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 414137 | 85 (0.960) | 10 (0.120) | 10/230 | NT | 10.8% | intergenic (+154/‑49) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_002947 | = 414158 | 86 (1.040) | intergenic (+175/‑28) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II | |||||
CCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/413986‑414137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggaggcTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGG < NC_002947/414158‑414011 CCGTTTTGCCTTATTCGCGTGTAAGGCCGTCCGGACAAGGACTGCACAAGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAG < 1:865401/150‑1 GTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGG < 2:2295936/109‑1 GTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGG > 1:2295936/1‑109 CTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCC < 1:1104738/139‑1 CTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCC > 2:1104738/1‑139 CACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGC < 2:1960841/131‑1 CACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGC > 1:1960841/1‑131 CCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGC‑‑CAGGCTGCGGTACAGCCTG > 2:2346853/1‑102 CCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGC‑‑CAGGCTGCGGTACAGCCTG < 1:2346853/102‑1 GGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGG > 1:2212222/1‑98 GGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGG < 2:2212222/98‑1 GCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCT > 2:128195/1‑86 GCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCT < 1:128195/86‑1 GGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGT > 2:1339608/1‑146 GGGAGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGT < 1:1339608/146‑1 AGGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCG < 1:753333/150‑1 GGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGG < 1:1798865/150‑1 GGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGG < 2:2146012/150‑1 GGCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGG < 2:2186971/150‑1 GCTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGG < 1:2165095/150‑1 CCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/413986‑414137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggaggcTACAGGCTGCGGTACAGCCTGGCCTCCCCTCTTTATATTCAGGCTATGTGGCGGACAGTGTACCACTCACATGGCCTATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGCCTGTGCAGTACCTGTGGGAGCGGG < NC_002947/414158‑414011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |