New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 717400	76 (0.860)	8 (0.100)	7/232	NT	9.8%	coding (65/1098 nt)	thiO	FAD‑dependent glycine/D‑amino acid oxidase
	?	NC_002947	= 717411	75 (0.900)					coding (76/1098 nt)	thiO	FAD‑dependent glycine/D‑amino acid oxidase

CGCCGTTGAGCACAGCACGCACTGTTGGGGAAGTTGAAGGTTCAATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/717245‑717400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctggcCGACCTTGGCTGCCAGGTTGAATGCCGTCAGCAGGCCGATCACCCCGCCGCCAACCACCACTACTTGCTTGCTCATCTGTCGATCCAACACCTGAAGTAAAACCGCGATGCACCGGGCATCATTGAACCTTCAACTTCCCCAACAG  <  NC_002947/717411‑717266                                                                                                                                                                                                                                                                                                                CGCCGTTGAGCACAGCACGCACTGTTGGGGAAGTTGAAGGTTCAATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAA                                                                                                                                                          <  1:1079877/150‑1  GCCGTTGAGCACAGCACGCGCTGTTGGGGAAGTTGAAGGTTCAATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTGAAC                                                                                                                                                         <  2:927364/150‑1   CCGTTGAGCACAGCACGCACTGTTGGGGAAGTTGAAGGTTCAATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACC                                                                                                                                                        <  1:1010724/150‑1                         TTGGGGAAGTTGAAGGTTCAATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGCCGACCTTGGCTGCCAGGT                                                                                                                                  <  1:1341929/150‑1                         TTGGGGAAGTTGAAGGTTCAATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTAAACCTGGACGAGCGTGGCTtcgggag                                                                                                                                  >  2:1341929/1‑143                                            AATGATGCCCGGTGCATTGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGCCGACCTTGGCTGCCAGG                                                                                                                                   <  2:572573/130‑1                                            AATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGGTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGCCGACCTTGGCTGCCAGG                                                                                                                                   >  1:572573/1‑130                                                                       CTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAAC                                                                                                                                                         <  1:269172/81‑1                                                                       CTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAAC                                                                                                                                                         >  2:269172/1‑81                                                                                                   AGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGCCGACCTTGGCTGCCAG                                                                                                                                    <  1:1389885/74‑1                                                                                                   AGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGCCGACCTTGGCTGCCAG                                                                                                                                    >  2:1389885/1‑74                                                                                                     CAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGCCGACCTTGGCTGCCAGGTTGAA                                                                                                                              >  1:2277655/1‑78                                                                                                     CAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGCCGACCTTGGCTGCCAGGTTGAA                                                                                                                              <  2:2277655/78‑1                                                                                                                                                         TGGCCGACCTTGGCTGCCAGGTTGAATGCCGTCAGCAGGCCGATCACCCCGCCGCCAACCACCACTACTTGCTTGCTCATCTGTCGATCCAACACCTGAAGTAAAACCGCGATGCACCGGGCATCATTGAACCTTCAACTTCCCCAACAG  >  1:895445/1‑150                                                                                                                                                                                                                                                                                                                CGCCGTTGAGCACAGCACGCACTGTTGGGGAAGTTGAAGGTTCAATGATGCCCGGTGCATCGCGGTTTTACTTCAGGTGTTGGATCGACAGATGAGCAAGCAAGTAGTGGTGGTTGGCGGCGGGGTGATCGGCCTGCTGACGGCATTCAACCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/717245‑717400 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctggcCGACCTTGGCTGCCAGGTTGAATGCCGTCAGCAGGCCGATCACCCCGCCGCCAACCACCACTACTTGCTTGCTCATCTGTCGATCCAACACCTGAAGTAAAACCGCGATGCACCGGGCATCATTGAACCTTCAACTTCCCCAACAG  <  NC_002947/717411‑717266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.