New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1126598 =	67 (0.760)	11 (0.150)	7/204	NT	16.7%	intergenic (‑47/+103)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	1126656 =	54 (0.740)					intergenic (‑105/+45)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase

AACGTGTTCGGCGACCGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1126766‑1126598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcattcgcgggtaaacccgcTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCCTTCCA  >  NC_002947/1126656‑1126804                                                                                                                                                                                                                                                                                                                                AACGTGTTCGGCGACCGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCG                                                                                                                                                                          >  1:523155/1‑150       TTCGGCGACCGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCG                                                                                                                                                                    >  1:1276339/1‑150          GGCGACCGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                                                                 <  1:1130636/150‑1          GGCGACCGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                                                                 <  1:426099/150‑1          GGCGACCGCAACCTGGTGTGCGCCTGCCCCTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                                                                 <  1:1810877/150‑1                CGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAAC                                                                                                                                                           <  2:1920596/150‑1                CGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAAC                                                                                                                                                           >  1:785112/1‑150                CGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAAC                                                                                                                                                           >  1:1673822/1‑150                CGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAAC                                                                                                                                                           <  2:523155/150‑1                    ACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGCATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGC                                                                                                                                                       >  1:1051384/1‑150                       TGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAA                                                                                                                                                            <  2:1167761/142‑1                       TGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAA                                                                                                                                                            >  1:1167761/1‑142                                           ATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                                                                 <  1:1416613/117‑1                                           ATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                                                                 >  2:1416613/1‑117                                               AGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGG                                                                                                                                                                <  2:800062/114‑1                                               AGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGG                                                                                                                                                                >  1:800062/1‑114                                                                 GATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCC                                                                                                                                                                           <  1:1071717/85‑1                                                                 GATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCC                                                                                                                                                                           >  2:1071717/1‑85                                                                       CCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAA                                                                                                                                                             <  2:884493/93‑1                                                                       CCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAA                                                                                                                                                             >  1:884493/1‑93                                                                                        TTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                                                                 >  1:1343206/1‑72                                                                                        TTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                                                                 <  2:1343206/72‑1                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCC                                                 >  1:605781/1‑150                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCC                                                 >  2:382029/1‑150                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGC                                                                      <  1:877286/129‑1                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGC                                                                      >  2:877286/1‑129                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTC                                                                                       >  2:2257728/1‑112                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTC                                                                                       <  1:2257728/112‑1                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGG                                                                                                              >  2:871021/1‑89                                                                                                                          CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGG                                                                                                              <  1:871021/89‑1                                                                                                                               AATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACA                                            >  2:1769176/1‑150                                                                                                                                ATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACAC                                           <  2:605781/150‑1                                                                                                                                        GTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGA                                   >  2:1047783/1‑150                                                                                                                                                    CCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGT                                      >  1:2071694/1‑135                                                                                                                                                    CCGCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGT                                      <  2:2071694/135‑1                                                                                                                                                      GCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGC                     <  2:1222339/150‑1                                                                                                                                                      GCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGC                     >  2:417335/1‑150                                                                                                                                                      GCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAC                                  <  2:841904/137‑1                                                                                                                                                      GCATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGAC                                  >  1:841904/1‑137                                                                                                                                                       CATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCG                    <  1:2046296/150‑1                                                                                                                                                        ATTCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGG                   >  2:2032225/1‑150                                                                                                                                                          TCGCGGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCC                 >  2:616518/1‑150                                                                                                                                                              GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTA             <  2:1417606/150‑1                                                                                                                                                              GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTA             <  2:466900/150‑1                                                                                                                                                                 tttACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTT          <  1:1715784/147‑1                                                                                                                                                                  AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTG         <  2:1986167/150‑1                                                                                                                                                                    ACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCC       >  1:763302/1‑150                                                                                                                                                                    ACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCC       >  2:1305084/1‑150                                                                                                                                                                     CCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCCT      >  1:15063/1‑150                                                                                                                                                                     CCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCCT      >  2:1380313/1‑150                                                                                                                                                                      CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTAAACCCTGCCGACCGGCGGCCAGTACTTGCCTT     >  2:1507693/1‑150                                                                                                                                                                        GCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCCTTCC   >  1:488236/1‑150                                                                                                                                                                        GCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCCTTCC   <  2:1007017/150‑1                                                                                                                                                                         CTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCCTTCCA  <  2:763302/150‑1                                                                                                                                                                                                                                                                                                                                AACGTGTTCGGCGACCGCAACCTGGTGTGCGCCTGCCCGTCGATCGAGAGCTATCAGGACGCCTGATAGCCCTCCCCGCCACCTGGCTTGGGTGGCGGGCTCTGTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1126766‑1126598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcattcgcgggtaaacccgcTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGGCCAGTACTTGCCTTCCA  >  NC_002947/1126656‑1126804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.