New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1195794	98 (1.110)	6 (0.070)	6/242	NT	5.6%	coding (278/426 nt)	xcpP	type II secretion pathway protein XcpP
	?	NC_002947	= 1195830	105 (1.210)					coding (314/426 nt)	xcpP	type II secretion pathway protein XcpP

CGCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCTGCAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1195644‑1195794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCAGACGAGTGATGGTGATGGCGCCGTCGTCGGG  <  NC_002947/1195830‑1195682                                                                                                                                                                                                                                                                                                              CGCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCTGCAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGC                                                                                                                                                        <  2:2005033/150‑1  GCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCTGCAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCG                                                                                                                                                       >  1:1090742/1‑150                                  CGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCTGCAATACCTCCGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCGCCAGGCGCTGACCGCGGGCCAG                                                                                                                       <  1:2299759/150‑1                                   GCCGCCTGACGACCGCGCGATCACCATCTCTCGTCTGCCGCTGTAATACCTCGGCAGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGATACGGCGAGCAAGTGCGCACCCTGGCGCCAGGCGCTGACCGCGGGCCAGG                                                                                                                      <  1:877683/150‑1                                                      ATCACCATCACTCGTCTGCCGCTGCAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTA‑GGCGAGCAAGTGCGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACT                                                                                                             >  1:2032821/1‑139                                                      ATCACCATCACTCGTCTGCCGCTGCAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTA‑GGCGAGCAAGTGCGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACT                                                                                                             <  2:2032821/139‑1                                                                              CAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTC                                                                                                        <  1:903229/121‑1                                                                              CAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTC                                                                                                        >  2:903229/1‑121                                                                                                                                                       GATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCAGACGAGTGATGGTGATGGCGCCGTCGTCGGG  >  2:993797/1‑150                                                                                                                                                                                                                                                                                                              CGCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCTGCAATACCTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1195644‑1195794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCAGACGAGTGATGGTGATGGCGCCGTCGTCGGG  <  NC_002947/1195830‑1195682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.