| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1195878 | 129 (1.460) | 7 (0.080) | 6/234 | NT | 5.3% | coding (362/426 nt) | xcpP | type II secretion pathway protein XcpP |
| ? | NC_002947 | = 1195894 | 128 (1.520) | coding (378/426 nt) | xcpP | type II secretion pathway protein XcpP | |||||
CTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1195727‑1195878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggCAGGCGCTCACGCCGCCCCTGGTTGTTGAAAATCAGGCCATCGCTGTCGATGTCCTGCAGCACGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATGGCT < NC_002947/1195894‑1195746 CTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCCACAGCGATGGCCTGATTTTCAACAACCAG > 1:2307886/1‑150 TCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCTGTTAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGCCAGACCAGTCCTGCTTTGTAACAACCAGG > 1:1134240/1‑150 TCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGG > 1:2306337/1‑150 TCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGG > 1:800465/1‑150 GCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAG > 1:1033618/1‑146 GCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAG < 2:1033618/146‑1 CTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGG > 1:281411/1‑142 CTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGG < 2:281411/142‑1 TCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGGGCAGGCGCT > 2:1754124/1‑150 TTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGGGCAGGCGCTCACGCCGCCCCTGG < 1:1610969/150‑1 CGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGGGCAGGCGCTCACGCCGCCCCTGGTTGTT < 1:1754124/150‑1 GGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGGGCAGGCGCTCACGCCGCCCCTGGTTGTT > 2:431833/1‑87 GGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGGGCAGGCGCTCACGCCGCCCCTGGTTGTT < 1:431833/87‑1 ATCGACAGCGATGGCCTGATTTTCAACAACCAGGGCAGGCGCTCACGCCGCCCCTGGTTGT > 1:429548/1‑61 ATCGACAGCGATGGCCTGATTTTCAACAACCAGGGCAGGCGCTCACGCCGCCCCTGGTTGT < 2:429548/61‑1 AGGGCAGGCGCTCACGCCGCCCCTGGTTGTTGAAAATCAGGCCATCGCTGTCGATGTCCTGCAGCACGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATG > 2:1723721/1‑150 AGGGCAGGCGCTCACGCCGCCCCTGGTTGTTGAAAATCAGGCCATCGCTGTCGATGTCCTGCAGCACGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATG > 1:1516668/1‑150 GCAGGCGCTCACGCCGCCCCTGGTTGTTGAAAATCAGGCCATCGCTGTCGATGTCCTGCAGCACGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATGGCT < 2:1789272/150‑1 CTCGGCGGCCTCAAGGCCCAGCCATTGGCCGCCAGTGTGGTGGTGCTGCGCTACGGCGAGCAAGTGCGCACCCTGGCCCGCGGTCAGCGCCTGGCGCCAGGGATCGTGCTGCAGGACATCGACAGCGATGGCCTGATTTTCAACAACCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1195727‑1195878‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggCAGGCGCTCACGCCGCCCCTGGTTGTTGAAAATCAGGCCATCGCTGTCGATGTCCTGCAGCACGATCCCTGGCGCCAGGCGCTGACCGCGGGCCAGGGTGCGCACTTGCTCGCCGTAGCGCAGCACCACCACACTGGCGGCCAATGGCT < NC_002947/1195894‑1195746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |