| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1219798 = | 92 (1.040) | 5 (0.060) | 5/230 | NT | 5.7% | coding (162/336 nt) | glmP | alginate biosynthesis membrane protein |
| ? | NC_002947 | 1219825 = | 79 (0.950) | coding (135/336 nt) | glmP | alginate biosynthesis membrane protein | |||||
CTGGTATTCAAAGCGGCCCTGGGCGCAGGCGTGGTGCTGTTGCTGGCAGTGCTGTCGAAAACGCGCAACTACTACATCGCAGGGCTGGTGCCGCTGTTCCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1219953‑1219798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccgacGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCACCAGCCCTGCGATGTAGTAGTTGCGCGTTTTCGACAGCACTGCCAGCAACAGCACCACGCCTGCGCCCAGGGCCGCTTTGAATACCAGGTCCACGTTGTTTTCCAG > NC_002947/1219825‑1219971 CTGGTATTCAAAGCGGCCCTGGGCGCAGGCGTGGTGCTGTTGCTGGCAGTGCTGTCGAAAACGCGCAACTACTACATCGCAGGGCTGGTGCCGCTGTTCCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATT > 2:582906/1‑150 GGTATTCAAAGCGGCCCTGGGCGCAGGCGTGGTGCTGTTGCTGGCAGTGCTGTCGAAAACGCGCAACTACTACATCGCAGGGCTGGTGCCGCTGTTCCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGC > 2:2042632/1‑150 GTATTCAAAGCGGCCCTGGGCGCAGGCGTGGTGCTGTTGCTGGCAGTGCTGTCGAAAACGCGCAACTACTACATCGCAGGGCTGGTGCCGCTGTTCCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGCC > 1:2336114/1‑150 ATTCAAAGCGGCCCTGGGCGCAGGCGTGGTGCTGTTGCTGGCAGTGCTGTCGAAAACGCGCAACTACTACATCGCAGGGCTGGTGCCGCTGTTCCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGA < 2:1454678/150‑1 TTCAAAGCGGCCCTGGGCGCAGGCGTGGTGCTGTTGCTGGCAGTGCTGTCGAAAACGCGCAACTACTACATCGCAGGGCTGGTGCCGCTGTTCCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGAC < 1:582906/150‑1 GATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGC < 1:2040512/80‑1 GATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGC > 2:2040512/1‑80 CCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCAC > 1:1057332/1‑80 CCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCAC < 2:1057332/80‑1 TCGTCGGCAAGGGGCGCAGCATTGCCGACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCACCAGCCCTGCGATGTAGTAGTTGCGCGTTTTCGACAGCACTGCCAGCAACAGCACCACGCCTGCGCCCAGGGCCGCTTTG > 1:1299588/1‑150 GACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCACCAGCCCTGCGATGTAGTAGTTGCGCGTTTTCGACAGCACTGCCAGCAACAGCACCACGCCTGCGCCCAGGGCCGCTTTGAATACCAGGTCCACGTTGTTTTCCAG > 2:1563586/1‑150 GACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCACCAGCCCTGCGATGTAGTAGTTGCGCGTTTTCGACAGCACTGCCAGCAA > 1:1994734/1‑93 GACGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCACCAGCCCTGCGATGTAGTAGTTGCGCGTTTTCGACAGCACTGCCAGCAA < 2:1994734/93‑1 CTGGTATTCAAAGCGGCCCTGGGCGCAGGCGTGGTGCTGTTGCTGGCAGTGCTGTCGAAAACGCGCAACTACTACATCGCAGGGCTGGTGCCGCTGTTCCCCACCTTCGCCCTGATTGCCCACTACATCGTCGGCAAGGGGCGCAGCATTGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1219953‑1219798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccgacGATGTAGTGGGCAATCAGGGCGAAGGTGGGGAACAGCGGCACCAGCCCTGCGATGTAGTAGTTGCGCGTTTTCGACAGCACTGCCAGCAACAGCACCACGCCTGCGCCCAGGGCCGCTTTGAATACCAGGTCCACGTTGTTTTCCAG > NC_002947/1219825‑1219971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |