New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1225143	74 (0.840)	4 (0.050)	4/236	NT	5.4%	coding (288/747 nt)	gltJ	glutamate/aspartate ABC transporter permease
	?	NC_002947	= 1225156	69 (0.810)					coding (275/747 nt)	gltJ	glutamate/aspartate ABC transporter permease

CGCGGGCGGCAGCTTCCTGGCCTTTGGGCAGCGCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1224992‑1225143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcTGCCAGAAGGCTTGCAGGAATGGTTCAAGCAGGACCTCAACCCGACCACTTCGGCGCTGATCAGCGTGGTCATCTGCCTGGGCCTGTTCACCGCCGCGCGCGTCTGTGAGCAAGTGCGTACCGGTATCCAGGCGCTGCCCAAAGGC  <  NC_002947/1225156‑1225011                                                                                                                                                                                                                                                                                                            CGCGGGCGGCAGCTTCCTGGCCTTTGGGCAGCGCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCT                                                                                                                                                      <  2:307028/150‑1                                 GCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGC                                                                                                                                                    >  1:1133672/1‑120                                 GCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGC                                                                                                                                                    <  2:1133672/120‑1                                                                   GCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTC                                                                                                                                                        >  1:768010/1‑82                                                                   GCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTC                                                                                                                                                        <  2:768010/82‑1                                                                          GGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCTGCCAGAAGGCTTGCAGGAAT                                                                                                                               >  1:1652521/1‑100                                                                          GGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCTGCCAGAAGGCTTGCAGGAAT                                                                                                                               <  2:1652521/100‑1                                                                                     CCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCTGCCAGAAGGCTTGCAGGAATG                                                                                                                              >  1:1737757/1‑90                                                                                     CCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCTGCCAGAAGGCTTGCAGGAATG                                                                                                                              <  2:1737757/90‑1                                                                                                                                                     CTGCTGCCAGAAGGCTTGCAGGAATGGTTCAAGCAGGACCTCAACCCGACCACTTCGGCGCTGATCAGCGTGGTCATCTGCCTGGGCCTGTTCACCGCCGCGCGCGTCTGTGAGCAAGTGCGTACCGGTATCCAGGCGCTGCCCAAAGGC  <  1:272901/150‑1                                                                                                                                                                                                                                                                                                            CGCGGGCGGCAGCTTCCTGGCCTTTGGGCAGCGCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1224992‑1225143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcTGCCAGAAGGCTTGCAGGAATGGTTCAAGCAGGACCTCAACCCGACCACTTCGGCGCTGATCAGCGTGGTCATCTGCCTGGGCCTGTTCACCGCCGCGCGCGTCTGTGAGCAAGTGCGTACCGGTATCCAGGCGCTGCCCAAAGGC  <  NC_002947/1225156‑1225011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.