New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1225143	74 (0.840)	4 (0.050)	4/236	NT	5.4%	coding (288/747 nt)	gltJ	glutamate/aspartate ABC transporter permease
	?	NC_002947	= 1225156	69 (0.810)					coding (275/747 nt)	gltJ	glutamate/aspartate ABC transporter permease

CCTGGCCTTTGGGCAGCGCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCGAGGAGCGACCCCAGCAGCAGCGC  >  NC_002947/1225007‑1225304                                                                                                                                                      |                                                                                                                                                     ccTGGCCTTTGGGCAGCGCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTGCTGCAAGCCTTCTGgca                                                                                                                                                      >  1:1550262/1‑150 (MQ=255)     gCCTTTGGGCAGCGCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAgcag                                                                                                                                                  <  1:272901‑M2/150‑5 (MQ=255)                  gcCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATAAGCTCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCGTGCAAGCATTCTGGAAGCAGGTCCGGTACCAgg                                                                                                                                     >  1:1964733/1‑150 (MQ=255)                   ccTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGa                                                                                                                                    <  2:272901/150‑1 (MQ=255)                    cTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGaa                                                                                                                                   >  1:2075581/1‑150 (MQ=255)                    cTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGaa                                                                                                                                   <  2:1120425/150‑1 (MQ=255)                     tGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAg                                                                                                                                  >  2:849575/1‑150 (MQ=255)                      ggAGACCGGTACGCACTTGCTCACAGACGCGCGCGGGGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGAAGGTCCGGTACCAGGAAGt                                                                                                                                 <  2:893359/150‑1 (MQ=255)                        aTACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTAc                                                                                                                               <  1:1066402/150‑1 (MQ=255)                          aCCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCa                                                                                                                             <  2:2075581/150‑1 (MQ=255)                           ccGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAg                                                                                                                            <  1:396552/150‑1 (MQ=255)                            cGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGa                                                                                                                           >  2:410556/1‑150 (MQ=255)                            cGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGa                                                                                                                           >  1:840022/1‑150 (MQ=255)                            cGGTACACACTTTCTCACACACTCGCGCCGCTTTAAACACGCCCAGTCATATGACCACGCTTATCAGCGCCGAAGTGATCGTGTTGAGGTCCTTCTTGAACCATTCCTGCAAGCCTTCTTGCAGCAGATCCGGTACCAGGAAGTACCAGa                                                                                                                           <  2:965749/150‑1 (MQ=255)                              gTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAg                                                                                                                                      >  2:557728/1‑137 (MQ=255)                              gTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAg                                                                                                                                      <  1:557728/137‑1 (MQ=255)                               tACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGa                                                                                                                        >  1:1838634/1‑150 (MQ=255)                                   cACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAg                                                                                                                    >  1:381690/1‑150 (MQ=255)                                   cACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGACAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAg                                                                                                                    >  1:939800/1‑150 (MQ=255)                                    aCTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGt                                                                                                                   >  1:40495/1‑150 (MQ=255)                                      ttGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGCTGAAGCGTTAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTg                                                                                                                 >  1:1353754/1‑150 (MQ=255)                                       tGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGc                                                                                                                <  1:455337/150‑1 (MQ=255)                                         cTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCAc                                                                                                              <  2:381690/150‑1 (MQ=255)                                          tCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCAcc                                                                                                             >  1:579475/1‑150 (MQ=255)                                          tCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCAcc                                                                                                             >  2:992523/1‑150 (MQ=255)                                            acaGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGTTCCTGCTTGAACCATTCCTGCAAGCCTGGCCACAGCAGGTCCGGTACGAGTAAGTACCAGATGAACAGTTGCACcag                                                                                                           >  2:674947/1‑150 (MQ=255)                                            acaGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTg                                                                                                                 >  1:2302450/1‑144 (MQ=255)                                            acaGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTg                                                                                                                 <  2:2302450/144‑1 (MQ=255)                                                          cggTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGc                                                                                             >  1:1557270/1‑150 (MQ=255)                                                                aCAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAg                                                                                                                                      <  1:1294394/103‑1 (MQ=255)                                                                aCAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAg                                                                                                                                      >  2:1294394/1‑103 (MQ=255)                                                                 cAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTg                                                                                                      <  1:2176824/134‑1 (MQ=255)                                                                 cAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTg                                                                                                      >  2:2176824/1‑134 (MQ=255)                                                                   ggCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGtt                                                                                    <  2:579475/150‑1 (MQ=255)                                                                       cAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCAc                                                                                >  2:1115184/1‑150 (MQ=255)                                                                       cAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCAc                                                                                <  2:1521595/150‑1 (MQ=255)                                                                          gCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTa                                                                             >  1:1986227/1‑150 (MQ=255)                                                                                  gcACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTgg                                                                     >  2:1657764/2‑150 (MQ=255)                                                                                  ccACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTgg                                                                     >  2:1135676/1‑150 (MQ=255)                                                                                   cACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGc                                                                    >  2:2096337/1‑150 (MQ=255)                                                                                    aCGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCa                                                                                                                                       >  1:1560952/1‑82 (MQ=255)                                                                                    aCGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCa                                                                                                                                       <  2:1560952/82‑1 (MQ=255)                                                                                    aCGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGcg                                                                   >  2:225886/1‑150 (MQ=255)                                                                                      gCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGcgat                                                                 >  2:2165880/1‑150 (MQ=255)                                                                                        tGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCg                                                                                                                                             >  2:2362510/1‑72 (MQ=255)                                                                                        tGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCg                                                                                                                                             <  1:2362510/72‑1 (MQ=255)                                                                                          ttaggcgcAGCAGTGGTCTGGTTGGCTTCATACTTCAGCCATTCCTACAGGTCGTCTGTCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGcgataccc                                                             <  2:263797/146‑1 (MQ=255)                                                                                          aTCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGcgataccc                                                             <  2:1964733/150‑1 (MQ=255)                                                                                          aTCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGcgataccc                                                             >  1:2144865/1‑150 (MQ=255)                                                                                                gcCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGcgatacccgatacc                                                       >  2:1853648/1‑150 (MQ=255)                                                                                                 ccGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCa                                                      <  1:1115184/150‑1 (MQ=255)                                                                                                  cGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAg                                                     <  2:2314371/150‑1 (MQ=255)                                                                                                         gTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTc                                              <  2:1838634/150‑1 (MQ=255)                                                                                                         gTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTc                                              <  2:1986227/150‑1 (MQ=255)                                                                                                          tCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTcg                                             >  1:1011659/1‑150 (MQ=255)                                                                                                            gggTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTcggt                                           <  1:2165880/150‑1 (MQ=255)                                                                                                                tGAGGTCCTGCTTGAACCATCCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCAACAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGCATGTACCCGATACCAGGCGGTTcggtacgg                                       <  1:674947/150‑1 (MQ=255)                                                                                                                  aGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTcggtacggta                                     >  2:684214/1‑150 (MQ=255)                                                                                                                   ggTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGaa                                                                                         <  1:522203/97‑1 (MQ=255)                                                                                                                   ggTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGaa                                                                                         >  2:522203/1‑97 (MQ=255)                                                                                                                         gCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGa                              <  1:1135676/150‑1 (MQ=255)                                                                                                                              aaCCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCa                                                                                                                             >  1:69946/1‑50 (MQ=255)                                                                                                                              aaCCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCa                                                                                                                             <  2:69946/50‑1 (MQ=255)                                                                                                                                 cATTCCTGCAAGCCTTCTGGCAgcaggaatggttcaagcaggacctcaacccgaccacttcggcgctgatcagcgtggtcatctgcctgg                                                                                  >  1:1737757‑M2/1‑22 (MQ=255)                                                                                                                                 cATTCCTGCAAGCCTTCTGGCAgcaggaatggttcaagcaggacctcaacccgaccacttcggcgctgatcagcgtggtcatctgcctgg                                                                                  <  2:1737757‑M2/90‑69 (MQ=255)                                                                                                                                 cATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTcg                                             <  1:1591252/127‑1 (MQ=255)                                                                                                                                 cATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTcg                                             >  2:1591252/1‑127 (MQ=255)                                                                                                                                 cATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCgagg                      >  2:2028176/1‑150 (MQ=255)                                                                                                                                  aTTCCTGCAAGCCTTCTGGCAgcaggaatggttcaagcaggacctcaacccgaccacttcggcgctgatcagcgtggtcatctgcctgggcctgttcacc                                                                       >  1:1652521‑M2/1‑21 (MQ=255)                                                                                                                                  aTTCCTGCAAGCCTTCTGGCAgcaggaatggttcaagcaggacctcaacccgaccacttcggcgctgatcagcgtggtcatctgcctgggcctgttcacc                                                                       <  2:1652521‑M2/100‑80 (MQ=255)                                                                                                                                  aTTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCgagga                     <  2:939800/150‑1 (MQ=255)                                                                                                                                  aTTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCgagga                     <  1:225886/150‑1 (MQ=255)                                                                                                                                  aTTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTACGGAAGAGTTCCACGTAGGCGGTGGCGCTACCCGATACCAGGCGCTTCGGTACGGGACGCATGACACCgagga                     >  1:420045/1‑150 (MQ=255)                                                                                                                                       tGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACGAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCGAGGAGCGAc                >  2:1437371/1‑150 (MQ=255)                                                                                                                                               ttCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACTTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCGAGGAGCGACCCcagcag        >  2:145129/1‑150 (MQ=255)                                                                                                                                               ttCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCGAGGAGCGACCCcagcag        <  1:178291/150‑1 (MQ=255)                                                                                                                                                 cTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGTATGAAACCGAGGAGCGACCCcagcagca      <  2:1353754/150‑1 (MQ=255)                                                                                                                                                     cagcagGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCGAGGAGCGACCCCAGCAGCAgcgc  >  2:470790/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CCTGGCCTTTGGGCAGCGCCTGGATACCGGTACGCACTTGCTCACAGACGCGCGCGGCGGTGAACAGGCCCAGGCAGATGACCACGCTGATCAGCGCCGAAGTGGTCGGGTTGAGGTCCTGCTTGAACCATTCCTGCAAGCCTTCTGGCAGCAGGTCCGGTACCAGGAAGTACCAGATGAACAGTTGCACCAGCAGTGGCACGTTGCGGAACAGTTCCACGTAGGCGGTGGCGATACCCGATACCAGGCGGTTCGGTACGGTACGCATGACACCGAGGAGCGACCCCAGCAGCAGCGC  >  NC_002947/1225007‑1225304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.