New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1443135	37 (0.420)	10 (0.140)	9/196	NT	22.4%	intergenic (‑66/+110)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
	?	NC_002947	= 1443153	40 (0.570)					intergenic (‑84/+92)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator

TGATGTCGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1442964‑1443135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttcgcgggcaagcccgctcctacAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAACGCCTGCAGCAAGA  <  NC_002947/1443153‑1443005                                                                                                                                                                                                                                                                                                                                   TGATGTCGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCT                                                                                                                                                                             >  1:968865/1‑150       CGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGG                                                                                                                                                                       <  2:968865/150‑1           GAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA                                                                                                                                                                   <  2:2045321/150‑1             GCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGC                                                                                                                                                                 <  1:1675058/150‑1               TTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCC                                                                                                                                                               >  2:1463888/1‑150                 GGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGC                                                                                                                                                             <  1:114656/150‑1                 GGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGC                                                                                                                                                             >  1:1997535/1‑150                                   GTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACtggg                                                                                                                                                   >  1:1695659/1‑138                                         GTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCC                                                                                                                                     <  2:1259186/150‑1                                            TTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTA                                                                                                                                  <  1:192133/150‑1                                                 GCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTTTGCCCTTCCCGGGCTAGTCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGC                                                                                                                             <  2:1892265/150‑1                                                  CAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCG                                                                                                                            <  1:671299/150‑1                                                   AGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG                                                                                                                           <  2:2223625/150‑1                                                     GCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCGTTCGCGGGCAAGCCCGCTCCTACACGGCACCGCGCCCCGCCGTAGGAGCGGGC                                                                                                                         <  2:2088411/150‑1                                                        TTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCTTGCCCGCgaa                                                                                                                                                          >  1:699/1‑111                                                        TTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCTTGCCCGCgaa                                                                                                                                                          <  2:699/114‑4                                                                            TACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTC                                                                                                                                                                           <  2:23203/77‑1                                                                            TACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTC                                                                                                                                                                           >  1:23203/1‑77                                                                                                         ATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG                                                                                                                           >  1:1121164/1‑96                                                                                                         ATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG                                                                                                                           <  2:1121164/96‑1                                                                                                                        TGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG                                                                                                                           >  2:423431/1‑81                                                                                                                        TGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGG                                                                                                                           <  1:423431/81‑1                                                                                                                        TGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA                                                                                                                                                                   >  1:611956/1‑41                                                                                                                        TGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAA                                                                                                                                                                   <  2:611956/41‑1                                                                                                                                                     CTTCGCGGGCAAGCCCGCTCCTACGGGGGGGCGCGGTGCCTTGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCC                         >  1:1320895/1‑150                                                                                                                                                     CTTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCC                         >  2:1997535/1‑150                                                                                                                                                      TTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAA                                                                           >  2:37667/1‑99                                                                                                                                                      TTCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAA                                                                           <  1:37667/99‑1                                                                                                                                                       TCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCAT                       <  1:1040121/150‑1                                                                                                                                                       TCGCGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCAT                       <  1:1040036/150‑1                                                                                                                                                          CGGGCAAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGC                    <  1:812358/150‑1                                                                                                                                                            GGCAAGTACGCTCCTACAAGGCACCTCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCG                  >  2:1241203/1‑150                                                                                                                                                               AAGCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAAC               >  1:1578973/1‑150                                                                                                                                                                 GCCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAACGC             <  2:1177024/150‑1                                                                                                                                                                  CCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATG                      >  1:711377/1‑140                                                                                                                                                                  CCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATG                      <  2:711377/140‑1                                                                                                                                                                  CCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCC                                       <  2:1510268/123‑1                                                                                                                                                                  CCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCC                                       >  1:1510268/1‑123                                                                                                                                                                  CCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCACCCGTATCACCCCGGGCATGGCCGCACGCC            >  1:1297429/1‑150                                                                                                                                                                  CCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGT                                                     >  2:1458966/1‑109                                                                                                                                                                  CCCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGT                                                     <  1:1458966/109‑1                                                                                                                                                                   CCGCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAACGCCT           >  2:2262909/1‑150                                                                                                                                                                     GCTCCTACAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAACGCCTGC         >  1:2228311/1‑150                                                                                                                                                                            CAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAACGCCTGCAGCAAGA  <  1:270674/150‑1                                                                                                                                                                            CAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAACGCCTGCAGCAAGA  <  1:2262909/150‑1                                                                                                                                                                                                                                                                                                                                   TGATGTCGCCGAGCTTGGGGTTGGGCAGGATCACGTTGAAGTCTTGCTGCAGGCGTTCGGCCATGGCCGGGGTGATACGGCTGAAGGCCAGGACGGTCTTTTTCATCGGGCAACTTCTCTGCAAGGCGGGGTGGGGCTGTGCTGGTCCCTTCGCGGGCAAGCCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1442964‑1443135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttcgcgggcaagcccgctcctacAAGGCACCGCGCCCCCCCGTAGGAGCGGGCTTGCCCGCGAAGGGACCAGCACAGCCCCACCCCGCCTTGCAGAGAAGTTGCCCGATGAAAAAGACCGTCCTGGCCTTCAGCCGTATCACCCCGGCCATGGCCGAACGCCTGCAGCAAGA  <  NC_002947/1443153‑1443005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.