| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1570443 = | 74 (0.840) | 12 (0.170) | 9/194 | NT | 18.6% | intergenic (+9/‑179) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease |
| ? | NC_002947 | 1570521 = | 47 (0.670) | intergenic (+87/‑101) | pcaF‑I/pcaT | beta‑ketoadipyl‑CoA thiolase/alpha‑ketoglutarate permease | |||||
TTTACTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1570615‑1570443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttccccgcgaagaggccTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGC > NC_002947/1570521‑1570663 TTTACTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGA < 2:1693757/150‑1TTTACTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTACGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGA > 2:1221500/1‑150 CTCCTGGAGGGTCCTAGGTAGTTCTGGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGACCCCTGTTGGAGCGG < 1:1489832/150‑1 TCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG < 1:1221500/150‑1 CCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGC < 1:778837/150‑1 CTGGAGGATCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCT > 2:1207724/1‑150 CTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAA < 1:1997027/150‑1 AGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGA < 2:869348/150‑1 AGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGA < 2:1825005/150‑1 GGTAGTTCTAGACATCCCTATTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCAAATGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAG < 1:1355759/150‑1 GGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG < 2:1897882/134‑1 GGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG > 1:1897882/1‑134 AGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCGCAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG > 1:98297/1‑132 AGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCGCAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGG < 2:98297/132‑1 CACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG > 1:199221/1‑110 CACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGG < 2:199221/110‑1 ACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAA < 1:1037826/122‑1 ACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAA > 2:1037826/1‑122 TCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGG > 2:248334/1‑122 TCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGG < 1:248334/122‑1 GGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGA > 2:2367717/1‑107 GGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGA < 1:2367717/107‑1 GCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGG > 2:1714084/1‑150 CGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATT > 2:1073509/1‑83 CGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATT < 1:1073509/83‑1 CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAA < 2:2249578/96‑1 CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAA > 1:2249578/1‑96 CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCAT > 1:175866/1‑77 CCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCAT < 2:175866/77‑1 CACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCC > 2:2113508/1‑150 ACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCG > 2:1314585/1‑150 ACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCG > 2:379488/1‑150 ACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCG > 1:3545/1‑150 TGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAAC < 1:1314585/150‑1 GAGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGC > 2:1818579/1‑150 AGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCG > 2:1491138/1‑150 AGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTA < 2:178648/91‑1 AGCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTA > 1:178648/1‑91 GCGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAAACTCTTACACCGGCGA > 2:440759/1‑150 CGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAA < 1:2113508/150‑1 CGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAA < 1:869348/150‑1 CGGGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGACAGCCCGATAGCGGAACGAGAGTGTTACTAGGTATGTCTAAAACTACCTAGGACCGTCCAGGACTAAACCCGTCATGCCCTAAACCTAATAGACCcggaaa > 2:989895/1‑144 GGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGA > 2:1284909/1‑110 GGCTTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGA < 1:1284909/110‑1 TTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTACACCAGTCATGACCTCAACCTCTTCCACCGGCGtgtaacg < 2:1899384/150‑8 TTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACG < 2:1997027/150‑1 TTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACAC < 2:226768/138‑1 TTCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACAC > 1:226768/1‑138 TCCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGC < 2:1221924/150‑1 CCCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCA < 2:658853/150‑1 CCCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAAATTGGGATGACGTCAAGCTATTACACCGGCGAAGAAgatcg > 1:1706076/1‑145 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGC < 1:1818579/150‑1 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGC > 1:438698/1‑150 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCC > 2:1974433/1‑96 CCGCGAAGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCC < 1:1974433/96‑1 AGAGGCCTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGC < 2:3545/150‑1 TTTACTCCTGGAGGGTCCTAGGTAGTTCTAGACATACCTAGTAACACACTCGTTCCGCTATCGGGCTGGCAATGGGCCTTATGTCTCACAGGAGAGGCCTCTTCGCGGGGAAGCCCGCTCCCACAGGTGATTGCGTGGATCCCTGTTGGAGCGGGCTTCCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1570615‑1570443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttccccgcgaagaggccTCTCCTGTGAGACATAAGGCCCATTGCCAGCCCGATAGCGGAACGAGTGTGTTACTAGGTATGTCTAGAACTACCTAGGACCCTCCAGGAGTAAACCCGTCATGACCTCAACCTATTACACCGGCGAAGAACGCAGCAAGCGC > NC_002947/1570521‑1570663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |