New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1777114 =	101 (1.140)	5 (0.060)	5/230	NT	5.5%	coding (109/303 nt)	PP_5476	hypothetical protein
	?	NC_002947	1777148 =	77 (0.930)					coding (143/303 nt)	PP_5476	hypothetical protein

GATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1777269‑1777114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgagcTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTTTGAGAATTTTTCAGATCAAGATCACGGACGGATCTTGGTCGGCAGAACGCCTGGGAAGG  >  NC_002947/1777148‑1777294                                                                                                                                                                                                                                                                                                                 GATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCG                                                                                                                                                           <  2:609121/150‑1   TCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGT                                                                                                                                                         <  1:1536355/150‑1     CGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGA                                                                                                                                                       >  2:2097805/1‑150     CGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGA                                                                                                                                                       >  1:1615871/1‑150       TCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGAGC                                                                                                                                                     >  1:326167/1‑150       TCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGAGC                                                                                                                                                     >  1:1338767/1‑150        CCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGagctatg                                                                                                                                                    <  2:2168970/150‑8                                   AACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGAG                                                                                                                                                      >  2:1068028/1‑121                                   AACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGAG                                                                                                                                                      <  1:1068028/121‑1                                                                                                                    tccCATAGCTCACCGGCGTCGATCTCCCGCCCGCGGTGCTCTATGCGAGATGCTTAAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTTTGAGAATTTTTCAGATCAAGA                                        <  1:22764/147‑1                                                                                                                           GCTCACCGGCGTCGATCTCCCGCCGGCGGTGAGCTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTT                                                             <  1:198034/122‑1                                                                                                                           GCTCACCGGCGTCGATCTCCCGCCGGCGGTGAGCTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTT                                                             >  2:198034/1‑122                                                                                                                             TCACCGGCGTCGATCTCCCGCCGGCGGTGAGCTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGA                                                                         >  1:1024431/1‑108                                                                                                                             TCACCGGCGTCGATCTCCCGCCGGCGGTGAGCTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGA                                                                         <  2:1024431/108‑1                                                                                                                                                     CGGTGAGCTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTTTGAGAATTTTTCAGATCAAGATCACGGACGGATCTTGGTCGGCAGAACGCCTGG       >  2:2326242/1‑150                                                                                                                                                        TGAGCTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTTTGAGAATTTTTCAGATCAAGATCACGGACGGATCTTGGTCGGCAGAACGCCTGGGAA    <  2:1068313/150‑1                                                                                                                                                          AGCTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTTTGAGAATTTTCCAGAACAAGACCACGGACGGATCTTGGTCGGCAGAACGCCTGGGAAGG  <  1:1860891/150‑1                                                                                                                                                          AGCTATGCGACACGCATGAGCTGGCAGAAGCAGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCCGGGATCTCGAGTTGTTTCGGTTTGAGAATTTTTCAGATCATCATCACGGACGGATCTTGGTCGGCAGAACGCCTGGGAAGG  <  1:2298243/150‑1                                                                                                                                                                                                                                                                                                                 GATCCGTCCGTGATCTTGATCTGAAAAATTCTCAAACCGAAACAACTCGAGATCCCAGGCTTCCTCATGCTCTAGCAGCGCCCATAGCCGTGCGGCTTCTGCCAGCTCAAGCATCTCGCATAGCTCACCGGCGTCGATCTCCCGCCGGCGGTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1777269‑1777114 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgagcTATGCGAGATGCTTGAGCTGGCAGAAGCCGCACGGCTATGGGCGCTGCTAGAGCATGAGGAAGCCTGGGATCTCGAGTTGTTTCGGTTTGAGAATTTTTCAGATCAAGATCACGGACGGATCTTGGTCGGCAGAACGCCTGGGAAGG  >  NC_002947/1777148‑1777294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.