New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1944558	83 (0.940)	4 (0.050)	4/234	NT	5.0%	intergenic (+16/+246)	actP‑I/PP_1744	acetate permease/hypothetical protein
	?	NC_002947	= 1944594	73 (0.870)					intergenic (+52/+210)	actP‑I/PP_1744	acetate permease/hypothetical protein

GGCCATTGCCTTCGTCAGCATCTGGTTCTTCTCGGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1944404‑1944558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcatGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTTGGACTTG  <  NC_002947/1944594‑1944446                                                                                                                                                                                                                                                                                                                  GGCCATTGCCTTCGTCAGCATCTGGTTCTTCTCGGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCC                                                                                                                                                            <  2:1880558/150‑1  GCCATTGCCTTCGTCAGCATCTGGTTCTTCTCGGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCT                                                                                                                                                           <  1:1458426/150‑1    CATTGCCTTCGTCAGCATCTGGTTCTTCTCGGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGC                                                                                                                                                         >  1:1990863/1‑150     ATTGCCTTCGTCAGCATCTGGTTCTTCTCGGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCA                                                                                                                                                        >  2:103905/1‑150                                                  AAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGG                                                                                                           <  1:201181/150‑1                                                  AAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGG                                                                                                           >  2:201181/1‑150                                                                                         TTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGG                                                                                                            >  1:1025834/1‑110                                                                                         TTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGG                                                                                                            <  2:1025834/110‑1                                                                                                                                                       TGCATGAAATAAAAAACGCCCCGACAAGCGGGGCGGTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTTGGA      <  1:11964/150‑1                                                                                                                                                         CATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGA                                                                                          >  1:2271754/1‑64                                                                                                                                                         CATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGA                                                                                          <  2:2271754/64‑1                                                                                                                                                          ATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTTG        <  1:587359/145‑1                                                                                                                                                          ATGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTTG        >  2:587359/1‑145                                                                                                                                                           TGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTTGGACTTG  >  2:1682436/1‑150                                                                                                                                                           TGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTTGGACTTG  >  2:1934558/1‑150                                                                                                                                                           TGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTT         <  1:553842/143‑1                                                                                                                                                           TGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTT         >  2:553842/1‑143                                                                                                                                                                                                                                                                                                                  GGCCATTGCCTTCGTCAGCATCTGGTTCTTCTCGGTCACCGACAAGTCCAAGGCGGCTGAGGATGAGCGCGCGCTGTTCTTCCCGCAGTTCGTGCGTTCGCAGACTGGCCTGGGTGCCAGCGGGGCGGTCTCGCACTAACATCAATCCCCTGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1944404‑1944558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcatGAAATAAAAAACGCCCCGACAAGCGGGGCGTTTTCAATGCAGGGGATTGATGTTAGTGCGAGACCGCCCCGCTGGCACCCAGGCCAGTCTGCGAACGCACGAACTGCGGGAAGAACAGCGCGCGCTCATCCTCAGCCGCCTTGGACTTG  <  NC_002947/1944594‑1944446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.