| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1970763 = | 75 (0.850) | 12 (0.160) | 10/206 | NT | 16.7% | intergenic (+14/‑252) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
| ? | NC_002947 | 1970865 = | 57 (0.770) | intergenic (+116/‑150) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region | |||||
CGGGGGCGGTGGGGAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1970931‑1970763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccgcgaagaggccggtgCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTG > NC_002947/1970865‑1971012 CGGGGGCGGTGGGGAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAA > 2:1450929/1‑150CGGGGGCGGTGGGGAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAA < 2:1860535/150‑1 CGGTGGGGAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGC < 1:269593/150‑1 GGGGAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAG < 1:1450929/150‑1 GGGAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCCCAGGATCACCACGGCCCTAAGGCCATGCGATCTCCCAATGGGCGCGGGCAAGCCCGCGAAGA > 1:2137237/1‑150 GGGAGAGGTGGCAGTTGGTATCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGA < 2:1937366/150‑1 GAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGG < 2:1489314/150‑1 GAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCC < 1:698202/150‑1 GAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTCCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCC < 2:1971272/150‑1 GTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGGTTTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGG > 2:2008306/1‑150 GTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGT > 2:2119697/1‑150 GTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCG < 2:405416/148‑1 GTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCG > 1:405416/1‑148 TGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTG > 2:1180206/1‑150 GTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGC > 2:620979/1‑136 GTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGC < 1:620979/136‑1 TTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGT < 1:1426801/127‑1 TTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGT > 2:1426801/1‑127 TTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTG‑AGGCGATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAA > 2:350232/1‑150 GCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCC > 2:203177/1‑150 CTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGGGAAGAGACCGGTGCAGGGAATACAAAAACAAGGTTTCAAGCG‑CGGCCGAGACCAACTGCCACCTCTCCCCCCCGCCCCC > 1:375153/1‑150 CTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCC > 2:1254298/1‑150 TCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCG > 2:608027/1‑150 CCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGg > 1:1489166/1‑114 CCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGg < 2:1489166/115‑2 CCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGC < 2:334556/74‑1 CCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGC > 1:334556/1‑74 CGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTT > 1:1847876/1‑150 GCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTG > 2:2159124/1‑77 GCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTG < 1:2159124/77‑1 CCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGA < 1:608027/150‑1 CTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAA < 1:203177/150‑1 CCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCG < 1:1254298/150‑1 GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTG‑AGGCGATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCA < 1:350232/150‑1 CCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGA > 1:1398771/1‑54 CCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGA < 2:1398771/54‑1 CCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATA > 2:1334490/1‑95 CCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATA < 1:1334490/95‑1 CGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCAT > 1:299248/1‑150 CGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCAAT > 2:1466065/1‑150 GCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATG < 2:1408937/150‑1 gGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGG < 2:337534/149‑1 CGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGG < 1:91411/150‑1 CGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTC‑TGCGTCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGG < 1:1231764/150‑1 AAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCA > 2:1246699/1‑150 AGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTC > 2:1416129/1‑35 AGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTC < 1:1416129/35‑1 GCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACT > 1:1692238/1‑150 GCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACT > 2:1168993/1‑150 CGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCA < 2:1963233/150‑1 CGGTGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCA > 2:2174546/1‑150 TGCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATATCATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTG < 2:1847876/150‑1 CGGGGGCGGTGGGGAGAGGTGGCAGTTGGTCTCAGCCGCGCTTGAAACCTGG‑TTTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1970931‑1970763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccgcgaagaggccggtgCAGGCAATACAAAAACCAGGTTTCAAGCG‑CGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCAGATCCATGGCACAACTCATTG > NC_002947/1970865‑1971012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |