New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2069977	NA (NA)	14 (0.170)	7/234	NT	NA	coding (308/1422 nt)	PP_1846	group II intron‑encoding maturase
	?	NC_002947	= 2069981	NA (NA)					coding (312/1422 nt)	PP_1846	group II intron‑encoding maturase

CCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2069823‑2069977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATC  <  NC_002947/2069981‑2069834                                                                                                                                                                                                                                                                                                                 CCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTACCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGTCTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAG                                                                                                                                                           <  1:2301850/150‑1  CGGACACGCTGATGAAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGG                                                                                                                                                          >  2:1897943/1‑150   GGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGC                                                                                                                                                         >  1:1102369/1‑150   GGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGC                                                                                                                                                         >  1:255775/1‑150    GACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCC                                                                                                                                                        <  2:541254/150‑1     ACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCA                                                                                                                                                       <  2:1671523/150‑1       ACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGC                                                                                                                                                     >  1:1291671/1‑150         GCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAA                                                                                                                                                   >  1:1408737/1‑150                GAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAG                                                                                                                                                      <  1:1839416/140‑1                GAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAG                                                                                                                                                      >  2:1839416/1‑140                    GGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATAACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGA                                                                                                                                        <  1:1445460/150‑1                     GGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGCTGCCCCTGCGGTCGCTGCAGTGGGGTTCTACGTTAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGAG                                                                                                                                       <  1:2100748/150‑1                     GGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGAG                                                                                                                                       <  2:1291671/150‑1                     GGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATAACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGAG                                                                                                                                       <  1:1940241/150‑1                     GGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATAACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGAG                                                                                                                                       <  1:1356092/150‑1                            GCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGA                                                                                                                                        <  1:1912311/142‑1                            GCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGA                                                                                                                                        >  2:1912311/1‑142                                                        AACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATCACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAG                                                                                                                                                           >  1:943534/1‑95                                                                      AACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGA                                                                                                                                        <  1:2075945/100‑1                                                                      AACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGA                                                                                                                                        >  2:2075945/1‑100                                                                                                            TGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGA                                                                                                                                        >  2:595704/1‑62                                                                                                            TGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGCAACCTGGCCTTGA                                                                                                                                        <  1:595704/62‑1                                                                                                                                             AACCCTCAAGGCCAGGTTGCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAG               >  2:1408737/1‑150                                                                                                                                             AACCCTCAAGGCCAGGTTGCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCA                                                                             <  2:2387807/88‑1                                                                                                                                             AACCCTCAAGGCCAGGTTGCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCA                                                                             >  1:2387807/1‑88                                                                                                                                                      GGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATAC                                         <  1:736426/115‑1                                                                                                                                                      GGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATAC                                         >  2:736426/1‑115                                                                                                                                                       GCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCC     <  2:1703047/150‑1                                                                                                                                                       GCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGT                    >  1:458603/1‑135                                                                                                                                                       GCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGT                    <  2:458603/135‑1                                                                                                                                                       GCCAGCAACCTGGCCTTGAGGGTTGGCCAATAATGGTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCC     >  1:571806/1‑150                                                                                                                                                         CAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCAT   <  2:1113183/150‑1                                                                                                                                                          AGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATC  <  1:2008839/150‑1                                                                                                                                                                                                                                                                                                                 CCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2069823‑2069977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATC  <  NC_002947/2069981‑2069834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.