New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 2069977NA (NA)14 (0.170) 7/234 NT NA coding (308/1422 nt) PP_1846 group II intron‑encoding maturase
?NC_002947 = 2069981 NA (NA)coding (312/1422 nt) PP_1846 group II intron‑encoding maturase

CCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCAGCAGCAGCTCACAC  >  NC_002947/2069965‑2070114
            |                                                                                                                                         
ccatCAACGCCAGTTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCAGCAGCAGCTCacac  <  2:1978272/147‑1 (MQ=0)
            |                                                                                                                                         
CCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCAGCAGCAGCTCACAC  >  NC_002947/2069965‑2070114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.