New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2271273	98 (1.110)	13 (0.170)	11/214	NT	12.5%	intergenic (+51/‑169)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val
	?	NC_002947	= 2271289	97 (1.260)					intergenic (+67/‑153)	PP_2002/PP_t31	oxidoreductase/tRNA‑Val

GAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2271112‑2271273 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacccgctcctacaGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGTGACA  <  NC_002947/2271289‑2271143                                                                                                                                                                                                                                                                                                                         GAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAA                                                                                                                                                                   >  2:1937815/1‑150  AAGATGTCGCGGCCATGGTTGCTTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAC                                                                                                                                                                  <  2:2334916/150‑1     ATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCG                                                                                                                                                               >  1:2194227/1‑150      TGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGC                                                                                                                                                              <  1:1776352/150‑1        TCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTC                                                                                                                                                            <  2:1569216/150‑1        TCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTC                                                                                                                                                            >  1:2157473/1‑150          GCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCT                                                                                                                                                          >  2:491250/1‑150            GGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTAC                                                                                                                                                        >  2:936694/1‑150                                     CGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAG                                                                                                                             <  2:2194227/150‑1                                      GCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGCCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAC                                                                                                                                                                  <  1:1475805/114‑1                                      GCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGCCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAAC                                                                                                                                                                  >  2:1475805/1‑114                                        CAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGG                                                                                                                          <  1:859841/150‑1                                                     TCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGT                                                                                                                        <  2:619602/139‑1                                                     TCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGT                                                                                                                        >  1:619602/1‑139                                                       ACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAG                                                                                                                                >  1:1248207/1‑129                                                       ACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAG                                                                                                                                <  2:1248207/129‑1                                                                         GTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCC                                                                                                                                                                >  2:473652/1‑81                                                                         GTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCC                                                                                                                                                                <  1:473652/81‑1                                                                                           CGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAG                                                                                                                                >  1:1754066/1‑93                                                                                           CGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAG                                                                                                                                <  2:1754066/93‑1                                                                                                                          TAAACTGCGCCGGCCTCTTCGCGGCTAAACTCGCTCCTACAGTCGGACATTAACCG‑T‑TG                                                                                                                                   >  1:2222724/1‑59                                                                                                                          TAAACTGCGCCGGCCTCTTCGCGGCTAAACTCGCTCCTACAGTCGGACATTAACCG‑T‑TG                                                                                                                                   <  2:2222724/59‑1                                                                                                                                   CCGGCCTCTTCGCGGATAAACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGTCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTG                               <  2:507183/150‑1                                                                                                                                       CCTCTTCGCGGCTAAACCCGCTCCTACA‑ACGGTTAATGTCCGAC‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGC                                                     <  1:2046593/124‑1                                                                                                                                       CCTCTTCGCGGCTAAACCCGCTCCTACA‑ACGGTTAATGTCCG‑ACTGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGC                                                     >  2:2046593/1‑124                                                                                                                                                     AACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGA                                                                       <  1:1616148/92‑1                                                                                                                                                     AACCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGA                                                                       >  2:1616148/1‑92                                                                                                                                                       CCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCT           >  1:936694/1‑150                                                                                                                                                       CCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGG                                                                             <  1:1262165/84‑1                                                                                                                                                       CCCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGG                                                                             >  2:1262165/1‑84                                                                                                                                                        CCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCGGGTGACAAATGCCGCCTG          >  1:874608/1‑150                                                                                                                                                        CCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTG          <  1:711730/150‑1                                                                                                                                                        CCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAG                                                                              >  1:870091/1‑82                                                                                                                                                        CCGCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAG                                                                              <  2:870091/82‑1                                                                                                                                                          GCTCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGC        >  1:885340/1‑150                                                                                                                                                            TCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGT      <  2:1802969/150‑1                                                                                                                                                            TCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGT      <  2:603189/150‑1                                                                                                                                                            TCCTACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGT      <  1:1443670/150‑1                                                                                                                                                               TACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGTGAC   >  2:865723/1‑150                                                                                                                                                               TACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGTGAC   <  2:94249/150‑1                                                                                                                                                                ACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGTGACA  <  2:1508732/150‑1                                                                                                                                                                ACAGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGAACACAAACCCCTGGCCGGTGACAAATGCCGCCTGGCGTGACA  <  1:1666152/150‑1                                                                                                                                                                                                                                                                                                                         GAAGATGTCGCGGCCATGGTTGCCTGGTTGCTGTCACGCCAGGCGGCATTTGTCACCGGCCAGGAGTTTGTGGTCGATGGCGGCATGACCCGCAAGATGATCTATACCTGAGCACCTTGTTTAAACTGCGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2271112‑2271273 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaacccgctcctacaGTCGGACATTAACCG‑T‑TGTAGGAGCGGGTTTAGCCGCGAAGAGGCCGGCGCAGTTTAAACAAGGTGCTCAGGTATAGATCATCTTGCGGGTCATGCCGCCATCGACCACAAACTCCTGGCCGGTGACAAATGCCGCCTGGCGTGACA  <  NC_002947/2271289‑2271143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.