New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472183	54 (0.610)	8 (0.130)	6/168	NT	15.4%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2472229	51 (0.850)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2471998‑2472183 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgtgccggcctcttcgcgggtaaacccgctcctacACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGAAGGCTTCGCGGTTGGAGTCATTCA  <  NC_002947/2472229‑2472081                                                                                                                                                                                                                                                                                                                                                 CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGC                                                                                                                                                                                           <  1:164107/150‑1     ACCGACTTGCCGTCGCAGGCCCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAGCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGGGCTGATCTATAGCCTGT                                                                                                                                                                                       >  1:76811/1‑150     ACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGT                                                                                                                                                                                       <  2:1206305/150‑1       CGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGC                                                                                                                                                                                     >  2:1067087/1‑150                     AGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGG                                                                                                                                                                       <  2:2147023/150‑1                     AGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGC                                                                                                                                                                                           <  1:677432/130‑1                     AGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGC                                                                                                                                                                                           >  2:677432/1‑130                          CAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGCTCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  >  1:1857093/1‑150                          CAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  >  1:1221160/1‑150                          CAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  >  2:865970/1‑150                          CAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAA                                                                                                                                                                  <  1:106566/150‑1                          CAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGC                                                                                                                                                                                           >  2:1928359/1‑125                          CAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGC                                                                                                                                                                                           <  1:1928359/125‑1                           AGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCAAAGCCTTCCATGACCCTTTCGATGCGCGGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAAC                                                                                                                                                                 <  1:297291/150‑1                            GAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACC                                                                                                                                                                <  2:1282893/150‑1                             AATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCC                                                                                                                                                               >  2:1354306/1‑150                                 AAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                           <  1:1067087/150‑1                                   GATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTG                                                                                                                                                                                        >  1:1182736/1‑119                                   GATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTG                                                                                                                                                                                        <  2:1182736/119‑1                                          TGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTG                                                                                                                                                  >  1:1593538/1‑150                                                 CAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATA                                                                                                                                                                                             >  1:1155774/1‑100                                                 CAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATA                                                                                                                                                                                             <  2:1155774/100‑1                                                  AAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGG                                                                                                                                          >  2:1841130/1‑150                                                                      GATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGTGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGCCCCACATTCGTGCTTG                                                                                                                      <  2:347861/150‑1                                                                                   CTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTC                                                                                                         >  2:770216/1‑150                                                                                            TCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCG                                                                                                <  1:865970/150‑1                                                                                            TCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTATTGGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCG                                                                                                <  1:770216/150‑1                                                                                             CCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG                                                                                               <  2:1593538/150‑1                                                                                             CCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG                                                                                               <  1:1841130/150‑1                                                                                              CAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGG                                                                                              <  1:820755/150‑1                                                                                                                                                               GCCTCGTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGGGGGAGCGGGTTTACCCGGGAAGAGGCCGGCACAGGCTATAGATCAGCGCCGCTCCAGCGCATTGACCAGATCAT                             >  2:76811/1‑150                                                                                                                                                                CCTCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATG                            >  1:2061903/1‑150                                                                                                                                                                  TCTTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGA                          >  2:1747516/1‑150                                                                                                                                                                    TTCGCGGGTAAACCCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGAAG                        >  2:1568622/1‑150                                                                                                                                                                                CCCGCTCCTACACCTGATTGGGGGTGGACACACATTGATGTTTGGGCGCAGGCCGTCGTAGGAGCGGGCTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATCGACCAGATCATGGAATGCTTCGCGGTTG            >  2:1740325/1‑150                                                                                                                                                                                 CCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGAAGGCTTCGCGGTTGG           >  2:783845/1‑150                                                                                                                                                                                 CCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGG                                                                    <  2:1877804/93‑1                                                                                                                                                                                 CCGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGG                                                                    >  1:1877804/1‑93                                                                                                                                                                                  CGCTCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGAAGGCTTCGCGGTTGGA          <  1:1568622/150‑1                                                                                                                                                                                     TCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGC                                                                                     <  1:334102/72‑1                                                                                                                                                                                     TCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGC                                                                                     >  2:334102/1‑72                                                                                                                                                                                     TCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCC                                                                                       >  2:463764/1‑70                                                                                                                                                                                     TCCTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCC                                                                                       <  1:463764/70‑1                                                                                                                                                                                       CTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAG                                                                     >  1:1416152/1‑86                                                                                                                                                                                       CTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAG                                                                     <  2:1416152/86‑1                                                                                                                                                                                       CTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG                                                                                               <  2:1733925/60‑1                                                                                                                                                                                       CTACACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGG                                                                                               >  1:1733925/1‑60                                                                                                                                                                                          CACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGAAGGCTTCGCGGTTGGAGTCATTCA  >  2:1745200/1‑150                                                                                                                                                                                                                                                                                                                                                 CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2471998‑2472183 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgtgccggcctcttcgcgggtaaacccgctcctacACCTGATTGGGGGTGGACACACATTGGTGTTTGGGCGCAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATAGATCAGCTCCGCTCCAGCGCATTGACCAGATCATGGAAGGCTTCGCGGTTGGAGTCATTCA  <  NC_002947/2472229‑2472081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.