New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2642479 =	93 (1.050)	5 (0.060)	5/238	NT	5.5%	coding (699/1407 nt)	PP_2312	lytic transglycosylase family protein
	?	NC_002947	2642525 =	82 (0.960)					coding (745/1407 nt)	PP_2312	lytic transglycosylase family protein

GCATGGCTTGCGGCGCCCCCAGGCGCACCCGGCTGTCCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2642522‑2642479 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCAGCAAGGATCG  >  NC_002947/2642525‑2642673                                                                                                                                                                                                   GCATGGCTTGCGGCGCCCCCAGGCGCACCCGGCTGTCCAGGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACC                                             >  2:711088/1‑150  CATGGCTTGCGGCGCCCCCAGGCGCACCCGGCTGTCCAGGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTT                                                                                                    >  1:1169807/1‑94  CATGGCTTGCGGCGCCCCCAGGCGCACCCGGCTGTCCAGGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTT                                                                                                    <  2:1169807/94‑1   ATGGCTTGCGGCGCCCCCAGGCGCACCCGGCTGTCCAGGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGG                                                                                            <  1:1576621/101‑1   ATGGCTTGCGGCGCCCCCAGGCGCACCCGGCTGTCCAGGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGG                                                                                            >  2:1576621/1‑101                                            CTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCAGCAAGGATCG  <  1:1538227/150‑1                                                                                                                                                                                                   GCATGGCTTGCGGCGCCCCCAGGCGCACCCGGCTGTCCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2642522‑2642479 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCAGCAAGGATCG  >  NC_002947/2642525‑2642673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.