New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2642479 =93 (1.050)5 (0.060) 5/238 NT 5.5% coding (699/1407 nt) PP_2312 lytic transglycosylase family protein
?NC_002947 2642525 = 82 (0.960)coding (745/1407 nt) PP_2312 lytic transglycosylase family protein

CCGTGGAGGATGTGCTGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCAGCAAGGATCG  >  NC_002947/2642379‑2642673
                                                                                                                                                  |                                                                                                                                                    
ccGTGGAGGATGTGCTGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGt                                                                                                                                                   <  1:670793/150‑1 (MQ=255)
 cGTGGAGGATGTGCTGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTa                                                                                                                                                  <  1:709225/150‑1 (MQ=255)
    ggaggaTGTGCTGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGt                                                                                                                                               <  2:2375780/150‑1 (MQ=255)
          tgtgCTGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAggggg                                                                                                                                         <  2:1540511/150‑1 (MQ=255)
            tgCTGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAggggggg                                                                                                                                       <  1:582493/150‑1 (MQ=255)
               tGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAg                                                                                                                                    >  1:2378972/1‑150 (MQ=255)
                ggAGATGGTACAGGCAGGCATCTACCCCCTGACCGTGGTCGAGCAGCCCATGGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCCCAACCCATGCGCTGGTATGTAGGGGGGGAAgc                                                                                                                                   >  2:342398/1‑150 (MQ=255)
                   aaTGGTACAGGCAGGCATCTACCACCCGACCGCCGTGGCGCAGCCTGGTGCCCGGCGTTGGGCCCGGGTTATGCCTCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGcgcc                                                                                                                                <  1:2339738/149‑1 (MQ=255)
                       gTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAgggg                                                                                                                                          >  1:1557236/1‑136 (MQ=255)
                       gTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAgggg                                                                                                                                          <  2:1557236/136‑1 (MQ=255)
                        tACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGAGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAAt                                                                                                                           >  2:1068907/1‑150 (MQ=255)
                          caggcaggCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTg                                                                                                                         <  1:1964664/150‑1 (MQ=255)
                           aggcaggcATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATTCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGc                                                                                                                        >  1:408511/1‑150 (MQ=255)
                             gcagtcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTg                                                                                                                      >  2:1033800/1‑150 (MQ=255)
                             gcaggcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCt                                                                                                                                                      <  2:158877/118‑1 (MQ=255)
                             gcaggcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCt                                                                                                                                                      >  1:158877/1‑118 (MQ=255)
                             gcaggcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAggggg                                                                                                                                         >  2:749697/1‑131 (MQ=255)
                             gcaggcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAggggg                                                                                                                                         <  1:749697/131‑1 (MQ=255)
                              caggcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTgg                                                                                                                     <  2:709405/150‑1 (MQ=255)
                               aggcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAgcgc                                                                                                                                 <  1:941215/137‑1 (MQ=255)
                               aggcaTCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAgcgc                                                                                                                                 >  2:941215/1‑137 (MQ=255)
                                         caccTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAgcgc                                                                                                                                 >  2:1323695/1‑127 (MQ=255)
                                         caccTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAgcgc                                                                                                                                 <  1:1323695/127‑1 (MQ=255)
                                         caccTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGAt                                                                                                          <  1:2186068/150‑1 (MQ=255)
                                         caccTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGAt                                                                                                          >  1:411067/1‑150 (MQ=255)
                                             tGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGt                                                                                                                                               >  2:250332/1‑109 (MQ=255)
                                             tGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGt                                                                                                                                               <  1:250332/109‑1 (MQ=255)
                                              gACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACtt                                                                                                     >  1:2126917/1‑150 (MQ=255)
                                                ccGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTc                                                                                                   <  2:2126917/150‑1 (MQ=255)
                                                 cGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAgggggg                                                                                                                                        >  2:614448/1‑112 (MQ=255)
                                                 cGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAgggggg                                                                                                                                        <  1:614448/112‑1 (MQ=255)
                                                 cGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCt                                                                                                  >  1:1208286/1‑150 (MQ=255)
                                                   tGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGc                                                                                                >  1:703213/1‑150 (MQ=255)
                                                     gTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCaa                                                                                              >  1:1542823/1‑150 (MQ=255)
                                                      tCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCTCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAg                                                                                             >  2:467739/1‑150 (MQ=255)
                                                      tCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAg                                                                                             <  2:411067/150‑1 (MQ=255)
                                                        gAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGt                                                                                           <  1:2214513/150‑1 (MQ=255)
                                                          gcagcCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGAAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTa                                                                                         <  1:129875/150‑1 (MQ=255)
                                                            agcCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTAcc                                                                                       <  2:2238778/150‑1 (MQ=255)
                                                             gcCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGTCCGCAGTCGATCACTTTCTGCAAGGTTACcg                                                                                      <  1:1068907/150‑1 (MQ=255)
                                                                cATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCt                                                                                                  >  2:845870/1‑135 (MQ=255)
                                                                cATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCt                                                                                                  <  1:845870/135‑1 (MQ=255)
                                                                cATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACcgcgc                                                                                   >  2:1915182/1‑150 (MQ=255)
                                                                cATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACcgcgc                                                                                   >  2:1807839/1‑150 (MQ=255)
                                                                      ccGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGa                                                                             >  1:1825939/1‑150 (MQ=255)
                                                                       cGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCACGCTCCAGAt                                                                            <  2:703213/150‑1 (MQ=255)
                                                                         gCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATaa                                                                          >  2:88499/1‑150 (MQ=255)
                                                                           gTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAAcc                                                                        <  2:1208286/150‑1 (MQ=255)
                                                                            ttGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAACTGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCa                                                                       >  1:1171656/1‑150 (MQ=255)
                                                                               ggCCGGGGTTATGCCGCGCCTGCGCCTGGACAGCAGGGTGCGCCTGGGGGCGACGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGa                                                                    <  2:1171656/150‑1 (MQ=255)
                                                                                gCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTg                                                                                                 <  1:1283186/120‑1 (MQ=255)
                                                                                gCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTg                                                                                                 >  2:1283186/1‑120 (MQ=255)
                                                                                gCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGAt                                                                   >  2:1538227/1‑150 (MQ=255)
                                                                                 cccGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGCCGCCGCGAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGGCGATCACCTTCTGCAAGGTTACCGCGCGCCAGATAACGAGGATg                                                                  >  2:940551/1‑150 (MQ=255)
                                                                                  ccGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATgc                                                                 <  1:181919/150‑1 (MQ=255)
                                                                                     ggTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATgcggc                                                              <  2:2376794/150‑1 (MQ=255)
                                                                                      gTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACcg                                                                                      >  2:1360118/1‑125 (MQ=255)
                                                                                      gTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCCGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACcg                                                                                      <  1:1360118/125‑1 (MQ=255)
                                                                                           gCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATc                                                                                                         <  1:68586/101‑1 (MQ=255)
                                                                                           gCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATc                                                                                                         >  2:68586/1‑101 (MQ=255)
                                                                                            ccGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAggggggg                                                                                                                                       <  2:2106365/70‑1 (MQ=255)
                                                                                            ccGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAggggggg                                                                                                                                       >  1:2106365/1‑70 (MQ=255)
                                                                                            ccGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACcg                                                                                      >  1:21558/1‑119 (MQ=255)
                                                                                            ccGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACcg                                                                                      <  2:21558/119‑1 (MQ=255)
                                                                                            ccGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAg                                                       <  2:408511/150‑1 (MQ=255)
                                                                                            ccGCGCCTGCGCCTGGACAGCCGGGTGCGCCTAGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAg                                                       >  2:48810/1‑150 (MQ=255)
                                                                                             cgcgCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAgc                                                      >  2:1840076/1‑150 (MQ=255)
                                                                                                      gcatggcttgcggcgcccccaggcgcacccggctgtccaggcgcTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTAcc                                             >  2:711088‑M2/45‑150 (MQ=255)
                                                                                                       catggcttgcggcgcccccaggcgcacccggctgtccaggcgcTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACttt                                                                                                    >  1:1169807‑M2/44‑94 (MQ=255)
                                                                                                       catggcttgcggcgcccccaggcgcacccggctgtccaggcgcTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACttt                                                                                                    <  2:1169807‑M2/51‑1 (MQ=255)
                                                                                                        atggcttgcggcgcccccaggcgcacccggctgtccaggcgcTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAgg                                                                                            <  1:1576621‑M2/59‑1 (MQ=255)
                                                                                                        atggcttgcggcgcccccaggcgcacccggctgtccaggcgcTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAgg                                                                                            >  2:1576621‑M2/43‑101 (MQ=255)
                                                                                                         tgGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCAGCTAccgcc                                          >  2:293650/1‑150 (MQ=255)
                                                                                                              aGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCa                                                                                                                <  2:492998/75‑1 (MQ=255)
                                                                                                              aGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCa                                                                                                                >  1:492998/1‑75 (MQ=255)
                                                                                                                ccGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTgg                                                                                                                     <  2:694933/68‑1 (MQ=255)
                                                                                                                ccGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTgg                                                                                                                     >  1:694933/1‑68 (MQ=255)
                                                                                                                ccGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAgca                                   <  1:467739/150‑3 (MQ=255)
                                                                                                                    gTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGCATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCgg                               <  1:1537133/150‑1 (MQ=255)
                                                                                                                     tGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCggg                              <  1:1807839/150‑1 (MQ=255)
                                                                                                                         ccTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTaca                          <  1:1145510/150‑1 (MQ=255)
                                                                                                                         ccTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTaca                          >  1:659052/1‑150 (MQ=255)
                                                                                                                                  gccgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGCTGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGtt                 <  2:1542823/150‑1 (MQ=255)
                                                                                                                                  gccgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCg                                >  1:1420571/1‑135 (MQ=255)
                                                                                                                                  gccgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCg                                <  2:1420571/135‑1 (MQ=255)
                                                                                                                                  gccgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTa                            >  2:2281351/1‑139 (MQ=255)
                                                                                                                                  gccgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTa                            <  1:2281351/139‑1 (MQ=255)
                                                                                                                                  gccgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGtt                 <  2:1810187/150‑1 (MQ=255)
                                                                                                                                    cgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTaca                          <  1:1820733/139‑1 (MQ=255)
                                                                                                                                    cgcAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTaca                          >  2:1820733/1‑139 (MQ=255)
                                                                                                                                       aaGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCa            <  1:1840076/150‑1 (MQ=255)
                                                                                                                                          ccATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCAGCa         >  1:1549271/1‑150 (MQ=255)
                                                                                                                                           cATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCGGCAGGCGATCACTTTCTGCAAGGTTACTGCGGGCCAGATAAGCAGGATCCGGCGTGCGAGCGCATCTACGGCCGCCAGTACGGGGTACACTACCCGTTGGCGTGCaa        >  2:1106715/1‑150 (MQ=255)
                                                                                                                                            aTGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTAccgcc                                          <  2:1868580/115‑1 (MQ=255)
                                                                                                                                            aTGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTAccgcc                                          >  1:1868580/1‑115 (MQ=255)
                                                                                                                                                 cTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCAGCAAGGATCg  <  1:1538227‑M2/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CCGTGGAGGATGTGCTGGAGATGGTACAGGCAGGCATCTACCACCTGACCGTGGTCGAGCAGCCCATTGCCCGGCGTTGGGCCCGGGTTATGCCGCGCCTGCGCCTGGACAGCCGGGTGCGCCTGGGGGCGCCGCAAGCCATGCGCTGGTATGTAGGGGGGGAAGCGCCGCAATTGCTGGCCGCAGTCGATCACTTTCTGCAAGGTTACCGCGCGCCAGATAACCAGGATGCGGCGTTCGAGCGCATCTACCGCCGCCAGTACCGGGTACACAACCCGTTGGCCAGCAAGGATCG  >  NC_002947/2642379‑2642673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.