New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2755434	102 (1.150)	10 (0.120)	9/238	NT	9.2%	coding (1717/3147 nt)	czcA‑II	cation efflux system protein
	?	NC_002947	= 2755453	98 (1.140)					coding (1736/3147 nt)	czcA‑II	cation efflux system protein

ACGGCAGCGCTATGCCCCGGTTCTGGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2755283‑2755434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccGGCACGCGCAGGGCCTGCAGGGCGAAGTCACCCTCGCTGAGGCTGGGGATGAACTCGCTGCCCATGCGGCTGGCCATCACGCCCGACAACAGCACCAGGGCGGCGGCGGCGGCACATGCCAGTTTGCGCCGGCCCAGCACCCAGGCCA  <  NC_002947/2755453‑2755306                                                                                                                                                                                                                                                                                                              ACGGCAGCGCTATGCCCCGGTTCTGGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGC                                                                                                                                                        >  2:807197/1‑150  CGGCAGCGCTATGCCCCGGTTCTGGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCC                                                                                                                                                       <  2:323761/150‑1   GGCAGCGCTATGCCCCGGTTCTGGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCC                                                                                                                                                      <  2:646922/150‑1                CCCGGTTCTGGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGG                                                                                                                                         >  1:1284600/1‑150                         GGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGC                                                                                                                                                        <  1:2376180/126‑1                         GGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGC                                                                                                                                                        >  2:2376180/1‑126                                               AAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGGG                                                                                                                                <  1:455203/128‑1                                               AAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGGG                                                                                                                                >  2:455203/1‑128                                                            CCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGGGC                                                                                                                               >  2:718638/1‑116                                                            CCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGGGC                                                                                                                               <  1:718638/116‑1                                                                                              GATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCG                                                                                                                                                         <  1:201981/56‑1                                                                                              GATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCG                                                                                                                                                         >  2:201981/1‑56                                                                                                               GCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGG                                                                                                                                 >  1:2169173/1‑63                                                                                                               GCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGG                                                                                                                                 <  2:2169173/63‑1                                                                                                                 AGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGGG                                                                                                                                >  2:1505186/1‑62                                                                                                                 AGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCCGGCACGCGCAGGGCCTGCAGGG                                                                                                                                <  1:1505186/62‑1                                                                                                                                       GCGAGGGTGACTTCGCCCTGCAGGCCCTGCGCGTGCCGGGCGAAGTCACCCTCGCTGAGGCTGGGGATGAACTCGCTGCCCATGCGGCTGGCCATCACGCCCGACAACAGCACCAGGGCGGCGGCGGCGGCACATGCCAGTTTGCGCCGG                  >  2:1284600/1‑150                                                                                                                                                     GCCCGGCACGCGCAGGGCCTGCAGGGCGAAGTCACCCTCGCTGAGGCTGGGGATGAACTCGCTGCCCATGCGGCTGGCCATCACGCCCGACAACAGCACCAGGGCGGCGGCGGCGGCACATGCCAGTTTGCGCCGGCCCAGCACCCAGGC    <  1:1663615/150‑1                                                                                                                                                      CCCGGCACGCGCAGGGCCTGCAGGGCGAAGTCACCCTCGCTGAGGCTGGGGATGAACTCGCTGCCCATGCGGCTGGCCATCACGCCCGACAACAGCACCAGGGCGGCGGCGGCGG                                      <  2:559681/115‑1                                                                                                                                                      CCCGGCACGCGCAGGGCCTGCAGGGCGAAGTCACCCTCGCTGAGGCTGGGGATGAACTCGCTGCCCATGCGGCTGGCCATCACGCCCGACAACAGCACCAGGGCGGCGGCGGCGG                                      >  1:559681/1‑115                                                                                                                                                       CCGGCACGCGCAGGGCCTGCAGGGCGAAGTCACCCTCGCTGAGGCTGGGGATGAACTCGCTGCCCATGCGGCTGGCCATCACGCCCGACAACAGCACCAGGGCGGCGGCGGCGGCACATGCCAGTTTGCGCCGGCCCAGCACCCAGGCCA  >  2:2384202/1‑150                                                                                                                                                                                                                                                                                                              ACGGCAGCGCTATGCCCCGGTTCTGGCCTGGGTGCTGGGCCGGCGCAAACTGGCATGTGCCGCCGCCGCCGCCCTGGTGCTGTTGTCGGGCGTGATGGCCAGCCGCATGGGCAGCGAGTTCATCCCCAGCCTCAGCGAGGGTGACTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2755283‑2755434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccGGCACGCGCAGGGCCTGCAGGGCGAAGTCACCCTCGCTGAGGCTGGGGATGAACTCGCTGCCCATGCGGCTGGCCATCACGCCCGACAACAGCACCAGGGCGGCGGCGGCGGCACATGCCAGTTTGCGCCGGCCCAGCACCCAGGCCA  <  NC_002947/2755453‑2755306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.