New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3264121 =	101 (1.140)	7 (0.080)	7/236	NT	7.0%	coding (469/1635 nt)	PP_2861	methyl‑accepting chemotaxis transducer
	?	NC_002947	3264139 =	90 (1.060)					coding (451/1635 nt)	PP_2861	methyl‑accepting chemotaxis transducer

CATCCGGCCAACCCCAAGCTCGACGACCAGGACCTTTCCGCCATCCGCGACCCCGATGGTTTCGCCGTGTTCAACGAAATGGTCGCCCTCGCCCGCCAGCAGGACGCCGGCCCGGTCAACTATCGCTGGCCCAAGCCCGGCGCCAGTGAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3264274‑3264121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTTGAACACGGCGAAACCATCGGGGTCGCGGATGGCGGAAAGGTCCTGGTCGTCGAGCTTGGGGTTGGCCGGATGCATGATCATCTTC  >  NC_002947/3264139‑3264287                                                                                                                                                                                                                                                                                                                 CATCCGGCCAACCCCAAGCTCGACGACCAGGACCTTTCCGCCATCCGCGACCCCGATGGTTTCGCCGTGTTCAACGAAATGGTCGCCCTCGCCCGCCAGCAGGACGCCGGCCCGGTCAACTATCGCTGGCCCAAGCCCGGCGCCAGTGAG                                                                                                                                                           <  2:671615/150‑1                                                                                                                                   CCAAGCCCGGCGCCAGTGAGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTT                                                                                       >  1:1382174/1‑88                                                                                                                                   CCAAGCCCGGCGCCAGTGAGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTT                                                                                       <  2:1382174/88‑1                                                                                                                                    CAAGCCCGGCGCCAGTGAGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGA                                                                                                 <  1:1315247/77‑1                                                                                                                                    CAAGCCCGGCGCCAGTGAGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGA                                                                                                 >  2:1315247/1‑77                                                                                                                                       GCCCGGCGCCAGTGGGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTTGAACACGGCGAAACCATCGGGGTCGCGGATGGCGGAAAGGTCCTGGTCGTCGAGCTTGGGGTTGGC                     >  1:642144/1‑150                                                                                                                                       GCCCGGCGCCAGTGGGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTTGAACACGGCGAAACCATCGGGGTCGCGGATGGCGGAAAGGTCCTGGTCGTCGAGCTTGGGGTTGGC                     <  2:642144/150‑1                                                                                                                                          CGGCGCCAGTGAGCCGGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTTGAACACGGCGAAACCATCGGGGTCGCGGATGGCGGAAAGGTCCTGGTCGTCGAGCTTGGGGTTGGCCGG                  >  2:1973975/1‑150                                                                                                                                                         GGGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTTGAACACGGCGAAACCATCGGGGTCGCGGATGGCGGAAAGGTCCTGGTCGTCGAGCTTGGGGTTGGCCGGATGCATGATCATCTT   >  1:1626931/1‑150                                                                                                                                                          GGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTTGAACACGGCGAAACCATCGGGGTCGCGGATGGCGGAAAGGTCCTGGTCGTCGAGCTTGGGGTTGGCCGGATGCATGATCATCTTC  <  1:192122/150‑1                                                                                                                                                                                                                                                                                                                 CATCCGGCCAACCCCAAGCTCGACGACCAGGACCTTTCCGCCATCCGCGACCCCGATGGTTTCGCCGTGTTCAACGAAATGGTCGCCCTCGCCCGCCAGCAGGACGCCGGCCCGGTCAACTATCGCTGGCCCAAGCCCGGCGCCAGTGAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3264274‑3264121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGCTTGGGCCAGCGATAGTTGACCGGGCCGGCGTCCTGCTGGCGGGCGAGGGCGACCATTTCGTTGAACACGGCGAAACCATCGGGGTCGCGGATGGCGGAAAGGTCCTGGTCGTCGAGCTTGGGGTTGGCCGGATGCATGATCATCTTC  >  NC_002947/3264139‑3264287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.