New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3319164 =	117 (1.320)	8 (0.100)	8/224	NT	7.4%	intergenic (‑85/+107)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator
	?	NC_002947	3319249 =	93 (1.150)					intergenic (‑170/+22)	treSA/PP_2919	trehalose synthase A/LysR family transcriptional regulator

TTACTTCCATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3319322‑3319164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagaGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGT  >  NC_002947/3319249‑3319393                                                                                                                                                                                                                                                                                                                  TTACTTCCATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGC                                                                                                                                                            <  1:521874/150‑1         ATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAG                                                                                                                                                    >  1:1410535/1‑150                                                                           TCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGT                                                                                                 >  1:1443296/1‑135                                                                           TCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGT                                                                                                 <  2:1443296/135‑1                                                                               CGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAA                                                                                                                                                     >  1:609895/1‑79                                                                               CGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAA                                                                                                                                                     <  2:609895/79‑1                                                                                                CCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCC                                                             >  1:617657/1‑150                                                                                                  ACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCA                                                                                  >  1:653091/1‑127                                                                                                  ACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCA                                                                                  <  2:653091/127‑1                                                                                                             GCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGC                                                <  2:617657/150‑1                                                                                                                                TCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGG                                                                               >  1:29188/1‑100                                                                                                                                TCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGG                                                                               <  2:29188/100‑1                                                                                                                                                     GCCCGCGAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCGGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCAT        >  1:300467/1‑150                                                                                                                                                           GAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTGATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGT  <  2:47124/150‑1                                                                                                                                                           GAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGT  >  1:1216876/1‑150                                                                                                                                                           GAAGAGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGT  <  2:1533389/150‑1                                                                                                                                                                                                                                                                                                                  TTACTTCCATGATGCGTTTCTGGCACCGCAGCAGTTGTCGGCCCGGCGCTGATCCTGCCTTTGCAGGCCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTGCAGCGCAAATCTTCAGCGGTATGTCCGCCTGTGGGAGCGGGCAAGCCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3319322‑3319164 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagaGGCCGGGCCTGCAAAGGCAGGATCAGCGCCGGGCCGACAACTGCTGCGGTGCCAGAAACGCATCATGGAAGTAATTGCGCACCGCCTGCATCGCCGGGCTGAATGCCCGTTCCCGGTGCCAGGCCAACCCCACGCTCATCGGCGT  >  NC_002947/3319249‑3319393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.