| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3462544 = | 93 (1.050) | 7 (0.090) | 7/228 | NT | 7.6% | coding (1857/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein |
| ? | NC_002947 | 3462574 = | 83 (1.010) | coding (1827/1929 nt) | PP_3078 | ABC transporter substrate‑binding protein | |||||
CCAGGCCGACATGCTGCGCCACGCCCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3462700‑3462544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctggacCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGGCCTGGGTGTCGGCGCGGACCAG > NC_002947/3462574‑3462717 CCAGGCCGACATGCTGCGCCACGCCCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGG > 1:143699/1‑150 CAGGCCGACATGCTGCGCCACGCCCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGC > 2:2145110/1‑150 AGGCCGACATGCTGCGCCACGCCCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCC < 2:2217292/150‑1 GCCGACATGCTGCGCCACGCCCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTG < 1:1659458/150‑1 CCGACATGCTCCGCCACGCCCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTGG < 1:58875/150‑1 CCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTG > 1:429204/1‑130 CCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTG < 2:429204/130‑1 AATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCC > 2:1972525/1‑100 AATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCC < 1:1972525/100‑1 CCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCT < 1:1774649/74‑1 CCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCT > 2:1774649/1‑74 GCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGG < 2:2074911/138‑1 GCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGG > 1:2074911/1‑138 CCAGGCCACCTATGACGAGGGCCTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGG > 1:729899/1‑150 CAGGCCACCTATGACGAGGGCCTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGGC > 2:1751150/1‑150 GGCCACCTATGACGAGGGCCTGGACCTTGGGCAGGCCGAAGCGG < 1:655819/44‑1 GGCCACCTATGACGAGGGCCTGGACCTTGGGCAGGCCGAAGCGG > 2:655819/1‑44 CCACCTATGACGAGGGCCTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGGCCTGG < 2:729899/150‑1 CTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGGCCTGGGTGTCGGCGCGGACCAG < 2:1892601/150‑1 CTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGGCCTGG > 2:1777031/1‑133 CTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGGCCTGG < 1:1777031/133‑1 CTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCA > 2:1097809/1‑89 CTGGACCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCA < 1:1097809/89‑1 CCAGGCCGACATGCTGCGCCACGCCCATGCCCTGGACCGCGTGCTGCAATGGAATTACTACTGGATCCCCAACTATTACCCACCGGGCAGCTCCACCGTCTGGTGGAACCGCTTCGGCCTGCCCAAGGTCCAGGCCACCTATGACGAGGGCCTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3462700‑3462544‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctggacCTTGGGCAGGCCGAAGCGGTTCCACCAGACGGTGGAGCTGCCCGGTGGGTAATAGTTGGGGATCCAGTAGTAATTCCATTGCAGCACGCGGTCCAGGGCATGGGCGTGGCGCAGCATGTCGGCCTGGGTGTCGGCGCGGACCAG > NC_002947/3462574‑3462717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |