| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3497430 | 76 (0.860) | 5 (0.060) | 4/230 | NT | 6.5% | coding (210/765 nt) | PP_5562 | hypothetical protein |
| ? | NC_002947 | = 3497437 | 73 (0.880) | coding (203/765 nt) | PP_5562 | hypothetical protein | |||||
CGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3497278‑3497430‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggccACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTGGAACACAGCGG < NC_002947/3497437‑3497290 CGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGG < 2:742959/150‑1CGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGG < 2:468593/150‑1 GATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGC < 2:1495934/150‑1 TGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCACTTCCAGGCCCTGG < 2:582575/150‑1 CAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGC < 1:1671290/129‑1 CAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGC > 2:1671290/1‑129 CAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGG < 1:1417629/127‑1 CAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGG > 2:1417629/1‑127 CAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCA > 1:1884297/1‑125 CAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCA < 2:1884297/125‑1 TCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGG > 1:940920/1‑117 TCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGG < 2:940920/117‑1 CAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCACTTCCAGGCCCTGGTC > 2:1537427/1‑69 CAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCCACTTCCAGGCCCTGGTC < 1:1537427/69‑1 GAGCCGATACGTTCGTAGAGTTCGACCAGGGCCACTTCCAGGCCCTGG < 1:2491/48‑1 GAGCCGATACGTTCGTAGAGTTCGACCAGGGCCACTTCCAGGCCCTGG > 2:2491/1‑48 CCAGGGCCACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTGGAACA > 1:1805754/1‑150 CCAGGGCCACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTG < 1:2294584/145‑1 CCAGGGCCACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTG > 2:2294584/1‑145 GCCACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGCTCAGCACCTCCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTGGAACACAGCG < 1:1377406/150‑1 GCCACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTGGAACACAGCG < 2:1805626/150‑1 CCACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTGGAACACAGCGG > 1:626780/1‑150 CCACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTGGAACACAGCGG > 1:2072585/1‑150 CGGATGACCTGGCCGCTGTGTTCCAGGGTCTTGTCGTATTCCAGCGGGAACAGTTCGGGGGTGGTGCTGATCAGGTTCAGCGGTACTTCCAGCTCGGTGACCAGCTGGAACGGCGCGGCCGAGCCGATACGTTCGTAGAGTTCGACCAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3497278‑3497430‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagggccACTTCCAGGCCCTGGTCGAACTCTACGAACGTATCGGCTCGGCCGCGCCGTTCCAGCTGGTCACCGAGCTGGAAGTACCGCTGAACCTGATCAGCACCACCCCCGAACTGTTCCCGCTGGAATACGACAAGACCCTGGAACACAGCGG < NC_002947/3497437‑3497290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |