New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 351158288 (0.990)7 (0.080) 6/232 NT 7.1% coding (207/4158 nt) PP_3108 rhs family protein
?NC_002947 = 3511612 100 (1.200)coding (237/4158 nt) PP_3108 rhs family protein

GGGGCTTCCTGATCGGGGCCGCCCTGGGGATTGCGCTGGTGGCCACGGTGGCCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3511428‑3511582
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcagt‑GGTTATCGTCCCTGAGGGGGACGAGAACATACTGCCTATCGCCTCTCCGGCGGCGGTCAGCAAGCTGCCCCCGATGCCGGCTGCGAGGCCGGCCAGCAAGGCCACGCCGAACCCGCAGGTGAACGTGGCAATGGCCACCGTGGCCACC  <  NC_002947/3511612‑3511465
                                                                                                                                                                                                                                                                                                                
GGGGCTTCCTGATCGGGGCCGCCCTGGGGATTGCGCTGGTGGCCACGGTGGCCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGTTTGCTGACCGCCGCCGGAGAGGCGATAG                                                                                                                                                            <  2:1804476/150‑1
   GCTTCCTGATCGGGGCCGCCCTGGGGATTGCGCTGGTGGCCACGGTGGCCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCTGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCA                                                                                                                                                         <  1:440536/150‑1
     TTCCTGATCGGGGCCGCCCTGGGGATTGCGCTGGTGGCCACGGTGGTCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT                                                                                                                                                       <  1:2163211/150‑1
                              TTGCGCTGGTGGCCACGGTGGCCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGTATGTTATCGTCCCTGAGGGGGACGA                                                                                                                              <  2:2153442/150‑1
                                  GCTGGTGGCCACGGTGGCCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGTATGTTCTCGTCCCTGAGGGGGACGAGAAC                                                                                                                          <  1:520174/150‑1
                                       TGGCCACGGTGGCCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGTATGTTATCGTCCCTGAGGGGGACGAGAACATACT                                                                                                                     <  1:1310665/150‑1
                                                   CCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGG                                                                                                                                                           <  2:1147720/100‑1
                                                   CCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGG                                                                                                                                                           >  1:1147720/1‑100
                                                    CATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT                                                                                                                                                       >  1:2228654/1‑103
                                                    CATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT                                                                                                                                                       <  2:2228654/103‑1
                                                                                              CGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATA                                                                                                                       >  1:1872085/1‑92
                                                                                              CGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATA                                                                                                                       <  2:1872085/92‑1
                                                                                                     GCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGCGGCGATAGGCAGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATACT                                                                                                                     >  1:256538/1‑87
                                                                                                     GCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATACT                                                                                                                     <  2:256538/87‑1
                                                                                                                                                    AGGCAGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATACTGCCTATCGCCTCTCCGGCGGCGGTCAGCAAGCTGCCCCCGATGCCGGCTGCGAGGCCGGCCAGCAAGGCCACGCCGAACCCGCAGGTGAACGTGGCAATGGCCACCGTGG       <  1:1674159/150‑1
                                                                                                                                                       CAGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATACTGCCTATCGCCTCTCCGGCGGCGGTCAGCAAGCTGCCCCCGATGCCGGCTGCGAGGCCGGCCAGCAAGGCCACGCCGAACCCGCAGGTGAACGTGGCAATGGCCACCGTGGCCA    >  2:2366257/1‑150
                                                                                                                                                        AGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATACTGCCTATCGCCTCTCCGGCGGCGGTCAGCAAGCTGCCCCCGATGCCGGCTGCGAGGCCGGCCAGCAAGGCCACGCCGAACCCGCAGGTGAACGTGG                      <  1:378712/131‑1
                                                                                                                                                        AGT‑GGTTATCGTCCCTGAGGGGGACGAGAACATACTGCCTATCGCCTCTCCGGCGGCGGTCAGCAAGCTGCCCCCGATGCCGGCTGCGAGGCCGGCCAGCAAGGCCACGCCGAACCCGCAGGTGAACGTGG                      >  2:378712/1‑131
                                                                                                                                                         GT‑GGTTATCGTCCCTGAGGGGGACGAGAACATACTGCCTATCGCCTCTCCGGCGGCGGTCAGCAAGCTGCCCCCGATGCCGGCTGCGAGGCCGGCCAGCAAGGCCACGCCGAACCCGCAGGTGAACGTGGCAATGGCCACCGTGGCCACC  >  1:1379902/1‑150
                                                                                                                                                                                                                                                                                                                
GGGGCTTCCTGATCGGGGCCGCCCTGGGGATTGCGCTGGTGGCCACGGTGGCCATTGCCACGTTCACCTGCGGGTTCGGCGTGGCCTTGCTGGCCGGCCTCGCAGCCGGCATCGGGGGCAGCTTGCTGACCGCCGCCGGAGAGGCGATAGGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3511428‑3511582
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcagt‑GGTTATCGTCCCTGAGGGGGACGAGAACATACTGCCTATCGCCTCTCCGGCGGCGGTCAGCAAGCTGCCCCCGATGCCGGCTGCGAGGCCGGCCAGCAAGGCCACGCCGAACCCGCAGGTGAACGTGGCAATGGCCACCGTGGCCACC  <  NC_002947/3511612‑3511465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.