| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3621157 | 96 (1.080) | 5 (0.060) | 5/240 | NT | 5.0% | coding (288/1053 nt) | PP_3191 | threonine ammonia‑lyase/dehydratase |
| ? | NC_002947 | = 3621180 | 95 (1.100) | coding (265/1053 nt) | PP_3191 | threonine ammonia‑lyase/dehydratase | |||||
CCAGCGCGCGCATTGCCTCTGTTTTGTATGCCGATGCGCCCGTGGTGGTGTAGACCTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3621006‑3621157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCAACAAGATGC‑GCCTGTTGCCGGCCGAGGCACGCAAGCAGGGGGTGATAGCCGCCTCATCCGGTAACCATGGGCAGGCCCTGGCCCTGGCCGGCAAGATGGCTGGCGTGCCAGTGAAGGTCTACACCACCACGGGCGCATCGGCAT < NC_002947/3621180‑3621033 CCAGCGCGCGCATTGCCTCTGTTTTGTATGCCGATGCGCCCGTGGTGGTGTAGACCTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGG > 2:1648536/1‑150 CAGCGCGCGCATTGCCTCTGTTTTGTATGCCGATGCGCCCGTGGTGGTGTAGACCTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGC > 2:1641256/1‑150 AGCGCGCGCATTGCCTCTGTTTTGTATGCCGATGCGCCCGTGGTGGTGTAGACCTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGCC > 2:1675739/1‑150 TCTGTTTTGTATGCCGATGCGCCCGTGGTGGTGTAGACCTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGCCGGCAACAAGATGC‑GC < 1:1675739/150‑1 CTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGC < 1:329142/96‑1 CTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGC > 2:329142/1‑96 CCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGCCAGCAACAAGATGC‑GCCTGTTGCCGGCCGAGG < 1:1711280/82‑1 CCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGCCAGCAACAAGATGC‑GCCTGTTGCCGGCCGAGG > 2:1711280/1‑82 CCCCTGCTTGCGTGCCTCGGCCGGCAACAGGCGCA‑TCTTGTTGCTGGCCGAGGCACGCAAGCAGGGGGTGATAGCCGCCTCATCCGGTAACCATGGGCAGGCCCTGGCCCTGGCCG < 2:74273/116‑1 CCCCTGCTTGCGTGCCTCGGCCGGCAACAGG‑CGCATCTTGTTGCTGGCCGAGGCACGCAAGCAGGGGGTGATAGCCGCCTCATCCGGTAACCATGGGCAGGCCCTGGCCCTGGCCG > 1:74273/1‑116 CCAGCAACAAGATGC‑GCCTGTTGCCGGCCGAGGCACGCAAGCAGGGGGTGATAGCCGCCTCATCCGGTAACCATGGGCAGGCCCTGGCCCTGGCCGGCAAGATGGCTGGCGTGCCAGTGAAGGTCTACACCACCACGGGCGCATCGGCAT < 1:862020/150‑1 CCAGCGCGCGCATTGCCTCTGTTTTGTATGCCGATGCGCCCGTGGTGGTGTAGACCTTCACTGGCACGCCAGCCATCTTGCCGGCCAGGGCCAGGGCCTGCCCATGGTTACCGGATGAGGCGGCTATCACCCCCTGCTTGCGTGCCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3621006‑3621157‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGCAACAAGATGC‑GCCTGTTGCCGGCCGAGGCACGCAAGCAGGGGGTGATAGCCGCCTCATCCGGTAACCATGGGCAGGCCCTGGCCCTGGCCGGCAAGATGGCTGGCGTGCCAGTGAAGGTCTACACCACCACGGGCGCATCGGCAT < NC_002947/3621180‑3621033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |