| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3778552 = | 92 (1.040) | 5 (0.060) | 5/224 | NT | 6.0% | coding (1563/2052 nt) | PP_3340 | TonB‑dependent receptor |
| ? | NC_002947 | 3778597 = | 74 (0.920) | coding (1608/2052 nt) | PP_3340 | TonB‑dependent receptor | |||||
TTTGCTGCCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3778708‑3778552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctggggCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGT > NC_002947/3778597‑3778742 TTTGCTGCCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCC > 1:41519/1‑150 GCCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGG < 2:780463/150‑1 GCCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGG < 2:574339/149‑1 GCCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGG > 1:574339/1‑149 GCCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGGCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGG > 1:407283/1‑150 CCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGGG > 2:1815340/1‑150 GGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGG > 1:562591/1‑99 GGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGG < 2:562591/99‑1 TTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGG > 1:96063/1‑78 TTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGG < 2:96063/78‑1 CCAGCGGCGTGTTTCGCTGACGTTGTCCGACTCGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACTAACGAACCGAGGTGTGGATGTCCTACTCCTGG < 1:892447/107‑1 CCAGCGGCGTGTTTCGCTGACGTTGTCCGACTCGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGG > 2:892447/1‑107 CAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGA > 2:1556686/1‑126 CAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGA < 1:1556686/126‑1 GTTTCGCCGACGTTGTCCGACTCGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCA > 2:891275/1‑150 CGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCTTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACAC < 1:1155514/150‑1 GCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACC > 1:722550/1‑150 GCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACC < 2:666699/150‑1 GGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGT < 1:1216913/150‑1 GCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGT < 2:1646732/147‑1 GCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGT > 1:1646732/1‑147 TTTGCTGCCTGGCAACGCGCTGCTGGGCTCAAGGATCTTGGAGTACTGCCAGGAGTAGGACATCCACACCTCGGTTCGTTCGTCCGGGTGCAGGTTGACCTGCAGGTCATAGCCCCAGCGGCGTGTTTCGCCGACGTTGTCCGACTCGCCGCTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3778708‑3778552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgctggggCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCTTGAGCCCAGCAGCGCGTTGCCAGGCAGCAAAGGCCAGGAAATCGATCACGTGCCACACCATCTGT > NC_002947/3778597‑3778742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |