| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3779669 = | 97 (1.100) | 7 (0.080) | 5/236 | NT | 7.3% | coding (77/1575 nt) | nikA | nickel ABC transporter substrate‑binding protein |
| ? | NC_002947 | 3779702 = | 85 (1.000) | coding (110/1575 nt) | nikA | nickel ABC transporter substrate‑binding protein | |||||
TCCAGCGTACCCGCGGCGGTATAGCGCACCAGGGGTTCATAGACCATGGCCTGGGCGTACATCTGGTTGGGGGAATAGCCACGCGGGTCGAGCGGCCCGGCATTCACAGGCCAGGAGTACACCAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3779822‑3779669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGCGGGTACGCTGGAGCCATGGCTGGCTGAGGCCTGGCAGGTT > NC_002947/3779702‑3779850 TCCAGCGTACCCGCGGCGGTATAGCGCACCAGGGGTTCATAGACCATGGCCTGGGCGTACATCTGGTTGGGGGAATAGCCACGCGGGTCGAGCGGCCCGGCATTCACAGGCCAGGAGTACACCAGCTGCGGCCCTTGCTCGGCGGCGCGG > 2:894182/1‑150 GCGTACCCGCGGCGGTATAGCGCACCAGGGGTTCATAGACCATGGCCTGGGCGTACATCTGGTTGGGGGAATAGCCACGCGGGTCGAGCGGCCCGGCATTCACAGGCCAGGCATACACCCGCTGAAGCCCTTGCTCGGCGGCGCTGCTGG > 2:1946749/1‑150 CATGGCCTGGGCGTCCATCTGGTTGGGGGAATAGCCACGCGGGTCGAGCGGCCCGGCATTCACAGGCCAGGAGTACACCAGCTGCGGCCCTTGCTCGGCGGCGCGGCTG > 2:2394877/1‑109 CATGGCCTGGGCGTACATCTGGTTGGGGGAATAGCCACGCGGGTCGAGCGGCCCGGCATTCACAGGCCAGGAGTACACCAGCTGCGGCCCTTGCTCGGCGGCGCGGCTG < 1:2394877/109‑1 ACAGGCCAGGAGTACACCAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATG > 1:1591126/1‑133 ACAGGCCAGGAGTACACCAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATG < 2:1591126/133‑1 CAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGCGGGTACGCT > 1:573969/1‑150 CAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGT < 1:1823083/126‑1 CAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGT > 2:1823083/1‑126 CAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGGTGTACTCCTGGCCTGTGAATGCCG > 1:1910248/1‑56 CAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGGTGTACTCCTGGCCTGTGAATGCCG < 2:1910248/56‑1 CTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGCGGGTACGCTGGAGCCATGGCTGGCTGAGGCCTGGCAG < 1:544610/150‑1 CTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGCGGGTACGCTGGAGCCATGGCTGGCTGAGGCCTGGCAG < 1:2083965/150‑1 CTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGCGGGTACGCTGGAGCCATGGCTGGCTGAGGCCTGGCAG < 1:1541563/150‑1 CTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGC < 2:1315829/113‑1 CTGGTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGC > 1:1315829/1‑113 GTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCTTGGTCTATGAAACCATGGTGCGGCGTACGTCCGCGGGTACGCTGGAGCCATGGCTGGCTGAGGCCTGGCAGGTT > 1:1741333/1‑150 TCCAGCGTACCCGCGGCGGTATAGCGCACCAGGGGTTCATAGACCATGGCCTGGGCGTACATCTGGTTGGGGGAATAGCCACGCGGGTCGAGCGGCCCGGCATTCACAGGCCAGGAGTACACCAGCTGCGGCCCTTGCTCGGCGGCGCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3779822‑3779669‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggTGTACTCCTGGCCTGTGAATGCCGGGCCGCTCGACCCGCGTGGCTATTCCCCCAACCAGATGTACGCCCAGGCCATGGTCTATGAACCCCTGGTGCGCTATACCGCCGCGGGTACGCTGGAGCCATGGCTGGCTGAGGCCTGGCAGGTT > NC_002947/3779702‑3779850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |