| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3806613 = | 105 (1.190) | 9 (0.110) | 8/234 | NT | 8.3% | coding (1186/2544 nt) | PP_3364 | two‑component system response regulator |
| ? | NC_002947 | 3806646 = | 98 (1.160) | coding (1219/2544 nt) | PP_3364 | two‑component system response regulator | |||||
TCTTGTTCGGGTCCCCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3806766‑3806613‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTGGGCCGGGGACCCGAACAAGACCTATGACAGCGGCGCGTTGGGCGAC > NC_002947/3806646‑3806792 TCTTGTTCGGGTCCCCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACA < 1:1912656/150‑1 CTTGTTCGGGTCCCCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAG < 1:1077269/150‑1 CTTGTTCGGGTCCCCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAG > 1:1125854/1‑150 CTTGTTCGGGTCCCCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAG < 1:1598331/150‑1 CTTGTTCGGGTCCCCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAG > 1:1054141/1‑150 CCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCGTATTTTAATG > 2:1183077/1‑150 GAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCGTATTTTAATGATGTGTCTGGT < 1:1183077/150‑1 gCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACA > 2:408197/2‑118 TCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACA < 1:408197/118‑1 CCCTTTGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACA < 1:1133170/84‑1 CCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACA > 2:1133170/1‑84 TACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGA < 1:1560265/126‑1 TACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGA > 2:1560265/1‑126 GCCTGGGCCGACGGAAGCACCGTCGGCCCAGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTGGGCCGGGGACCCGAA > 1:2375611/1‑150 CTGGGCCGACGGAAGCACCGTCG‑‑ACAGTCGTATTTTAATGATGTGTCTGGTGTGCT > 1:2132425/1‑56 CTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTG > 2:548778/1‑131 CTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTG < 1:548778/131‑1 CTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCGTATTTTAATGATGTGTCTGGTGTGCT < 2:2132425/56‑1 CAGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTGGGCCGGGGACCCGAACAAGACCTATGACAGCGGCGCGTTGGGC < 2:1663311/150‑1 AGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTGGGCCGGGGACCCGAACAAGACCTATGACAGCGGCGCGTTGGGCG > 2:368077/1‑150 AGGCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTGGGCCGGGGACCCGAACAAGACCTATGACAGCGGCGCGTTGGGCG > 1:679570/1‑150 GCGTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTGGGCCGGGGACCCGAACAAGACCTATGACAGCGGCGCGTTGGGCGAC < 2:1077269/150‑1 TCTTGTTCGGGTCCCCGGCCCAATCGAGTGTCTCGACCACCTCCTTGCGGAAGAAGATCAAGTAATCCCTTGGGTGTTGCGACATCGGAATAATCAGCACACCAGACACATCATTAAAATACGCCTGGGCCGACGGAAGCACCGTCG‑‑ACAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3806766‑3806613‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgTATTTTAATGATGTGTCTGGTGTGCTGATTATTCCGATGTCGCAACACCCAAGGGATTACTTGATCTTCTTCCGCAAGGAGGTGGTCGAGACACTCGATTGGGCCGGGGACCCGAACAAGACCTATGACAGCGGCGCGTTGGGCGAC > NC_002947/3806646‑3806792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |