| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3947957 = | 30 (0.340) | 6 (0.090) | 5/190 | NT | 18.4% | coding (136/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947 | 3948042 = | 30 (0.440) | coding (51/1797 nt) | PP_3483 | type II secretion system protein | |||||
CAGCCTGCGACGCGCCCCTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3948128‑3947957‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTG > NC_002947/3948042‑3948190 CAGCCTGCGACGCGCCCCTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTG < 2:1585153/150‑1 CGACGCGCCCCTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGG < 1:690182/150‑1 CGACGCGCCCCTGAGCGGAGTCGCAGGCCACGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATCCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGG < 2:1563565/150‑1 GACGCGCCCCTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGG < 2:2226564/150‑1 GCGCCCCTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCAT < 2:1413149/150‑1 GCCCCTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGC < 1:2282877/150‑1 CTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTCTGCAGCCCACAGACCTGTGATGTACCGGTGGGAGCGGGCATGCCCGC < 2:1620818/150‑1 GCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGG > 2:730763/1‑128 GCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGG < 1:730763/128‑1 ATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGT < 2:514201/102‑1 ATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGT > 1:514201/1‑102 TTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGA > 1:1619932/1‑124 TTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGA < 2:1619932/124‑1 CCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGA > 1:1051468/1‑93 CCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGA < 2:1051468/93‑1 GCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCA > 2:1322119/1‑150 TCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGG > 1:2161917/1‑150 TCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGG > 1:1708298/1‑150 CCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGGATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGC > 1:2297833/1‑145 CCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGC < 2:2297833/145‑1 GCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGG < 2:2161917/150‑1 TACCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCC < 1:1322119/150‑1 CTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGT < 2:1708298/150‑1 CTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGT > 2:1941307/1‑150 CTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGT > 2:1511395/1‑150 tcgtcGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAG > 1:2156240/6‑150 TGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAG < 2:2282877/150‑1 ttcGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGT > 1:2037647/4‑145 ttcGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGT < 2:2037647/142‑1 GGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGT < 1:2000902/145‑1 GGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGT > 2:2000902/1‑145 gcGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAG < 1:1729794/148‑1 AGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGT > 1:1396147/1‑150 AGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCCGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGT < 2:1396147/150‑1 GCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATC < 1:1413149/150‑1 TGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTC < 2:1981089/150‑1 CCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTC > 2:1804426/1‑150 CCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTC > 1:830044/1‑150 CGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCG < 1:2397619/150‑1 GCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATAGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGG < 1:1004663/150‑1 ACGTCGGTGCATTCTTTGCAGATTACGGGGTTGGATCGAATGCTTCGGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTG < 2:911472/150‑1 CAGCCTGCGACGCGCCCCTGAGCGGAGTCGCAGGCCATGCCAGAAGCATTCGATGCAACCCCGGAATCTGCAAAGCCTGCACCGACGTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3948128‑3947957‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcatgcccgcgaagaCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTG > NC_002947/3948042‑3948190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |