New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3947957 =30 (0.340)6 (0.090) 5/190 NT 18.4% coding (136/1797 nt) PP_3483 type II secretion system protein
?NC_002947 3948042 = 30 (0.440)coding (51/1797 nt) PP_3483 type II secretion system protein

Only 100 of 102 total aligned reads displayed.

TAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACT  >  NC_002947/3947809‑3948103
                                                                                                                                                     |                                                                                                                                                  
cagggcccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgcccgaagcattcgatccaaccccgtaatctgcaaagaatgcaccgacgt                                                                                                                                                    <  2:911472‑M1/1‑1 (MQ=255)
 aaTGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCT                                                                                                                                                  >  1:2107907‑M1/1‑150 (MQ=255)
    gCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCG                                                                                                                                               >  2:1042205‑M1/1‑150 (MQ=255)
      ccgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggctatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcgc                                                                                                                                              <  1:1004663‑M1/7‑1 (MQ=255)
       cgacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTcgcg                                                                                                                                             <  1:2397619‑M1/8‑1 (MQ=255)
        gacgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCgg                                                                                                                                            >  2:1804426‑M1/142‑150 (MQ=255)
         gTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGC                                                                                                                                          >  2:1032585‑M1/1‑150 (MQ=255)
           gacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCa                                                                                                                                         <  2:1981089‑M1/12‑1 (MQ=255)
            aGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTGCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGTAAATTTTTGCTGGGTTCTTCGCGGGCATG                                                                                                                                       >  2:149455‑M1/1‑150 (MQ=255)
             ggCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                      <  2:2036671‑M1/150‑1 (MQ=255)
              gatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGc                                                                                                                                      <  1:1413149‑M1/15‑1 (MQ=255)
               cccAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                      <  2:371302‑M1/148‑1 (MQ=255)
               cccAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                      >  1:371302‑M1/1‑148 (MQ=255)
                 cAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGCGGTCTTGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGC                                                                                                                                  <  1:62429‑M1/150‑1 (MQ=255)
                  aGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGGAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT                                                                                                                                 <  2:790634‑M1/150‑1 (MQ=255)
                  aGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCT                                                                                                                                 >  2:854810‑M1/1‑150 (MQ=255)
                   actgctcacaggggaatagcggcgcccgcacccctggcggagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCt                                                                                                                                 <  2:1396147‑M1/20‑1 (MQ=255)
                   actgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCt                                                                                                                                 >  1:1396147‑M1/131‑150 (MQ=255)
                    gcgcCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GACGAAATTTTTGCTCGGTTCTTCGCGTGCATGCCCGCgaa                                                                                                                               <  1:1032585‑M1/150‑4 (MQ=255)
                    ctgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCcgcgc                                                                                                                                <  1:1729794‑M1/21‑3 (MQ=255)
                      gcCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCA                                                                                                                             >  2:1039134‑M1/1‑150 (MQ=255)
                       ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATgcccgcgacga                                                                                                                             >  1:2156240‑M1/127‑145 (MQ=255)
                       ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCca                                                                                                                             <  2:2282877‑M1/24‑1 (MQ=255)
                          ggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG                                                                                                                         >  1:2238139‑M1/1‑150 (MQ=255)
                          acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCccgcgaa                                                                                                                               <  2:2037647‑M1/22‑4 (MQ=255)
                          acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCccgcgaa                                                                                                                               >  1:2037647‑M1/124‑142 (MQ=255)
                          acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTcc                                                                                                                               >  2:2000902‑M1/124‑145 (MQ=255)
                          acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTcc                                                                                                                               <  1:2000902‑M1/22‑1 (MQ=255)
                          acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                          >  2:1511395‑M1/124‑150 (MQ=255)
                          acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                          >  2:1941307‑M1/124‑150 (MQ=255)
                          acaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                          <  2:1708298‑M1/27‑1 (MQ=255)
                           gTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGTGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGt                                                                                                                        >  2:2048126/1‑150 (MQ=255)
                           gTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGt                                                                                                                        <  1:189943/150‑1 (MQ=255)
                             ggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTa                                                                                                                       <  1:1322119‑M1/30‑1 (MQ=255)
                              aaGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGG                                                                                                                                           >  1:2083115‑M1/1‑128 (MQ=255)
                              aaGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGG                                                                                                                                           <  2:2083115‑M1/128‑1 (MQ=255)
                                 gtgtCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGTGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATca                                                                                                                  <  1:2048126/150‑1 (MQ=255)
                                      gggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGt                                                                                                             <  1:1042205/150‑1 (MQ=255)
                                       ggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                      >  2:252294‑M1/1‑124 (MQ=255)
                                       ggggTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGC                                                                                                                                      <  1:252294‑M1/124‑1 (MQ=255)
                                          gtgtCGCAGGCCAGGAGTTCCAGGCAGTCGAGCAGGCGCTCGTAAGTGGCTTGCAGACGGGTCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgt                                                                                                         <  2:157526/150‑1 (MQ=255)
                                           tgtCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCtgtg                                                                                                        <  1:123294/150‑1 (MQ=255)
                                             tCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTggg                                                                                                      <  2:2238139/150‑1 (MQ=255)
                                               gCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCga                                                                                                                                >  2:492647‑M1/1‑120 (MQ=255)
                                               gCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCga                                                                                                                                <  1:492647‑M1/122‑3 (MQ=255)
                                               gCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCt                                                                                                    <  1:2048921/150‑1 (MQ=255)
                                               gCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCA                                                                                                                             <  2:148890‑M1/125‑1 (MQ=255)
                                               gCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGATACTGCGCGGGCATGCCCGCTCCCA                                                                                                                             >  1:148890‑M1/1‑125 (MQ=255)
                                                 aggccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGc                                                                                                  <  1:200419/150‑1 (MQ=255)
                                                  ccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGc                                                                                                  <  2:2161917‑M1/51‑1 (MQ=255)
                                                   gccaggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCAt                                                                                                >  2:1088142/1‑150 (MQ=255)
                                                        gCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATc                                                                                           >  2:1926819‑M2/1‑149 (MQ=255)
                                                            tCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgt                                                                                       >  2:1614762‑M2/1‑145 (MQ=255)
                                                              cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgg                                                                                     >  1:1183470‑M2/1‑143 (MQ=255)
                                                              cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                          <  1:1643093‑M1/113‑1 (MQ=255)
                                                              cAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAG                                                                                                                          >  2:1643093‑M1/1‑113 (MQ=255)
                                                                ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtggga                                                                                   >  2:2107907‑M2/1‑141 (MQ=255)
                                                                 cctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa                                                                                   >  1:1708298‑M1/85‑150 (MQ=255)
                                                                 cctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa                                                                                   >  1:2161917‑M1/85‑150 (MQ=255)
                                                                   tgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGc                                                                                 >  2:1322119‑M1/83‑150 (MQ=255)
                                                                    gcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                     <  2:2297833‑M1/64‑1 (MQ=255)
                                                                    gcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatccaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTgg                                                                                     >  1:2297833‑M1/82‑145 (MQ=255)
                                                                    gTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgg                                                                               <  1:1039134‑M1/150‑43 (MQ=255)
                                                                            ggCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggc                                                                             >  1:12409‑M1/1‑100 (MQ=255)
                                                                            ggCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtgggagcgggc                                                                             <  2:12409‑M1/144‑45 (MQ=255)
                                                                              cgcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTTCCACAGGTACATCAAAGGTCTGTGTGGTGGAGACAAcctgagggaggggggatgcccgc                                                                     <  1:292829‑M2/150‑24 (MQ=255)
                                                                               gcTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTTTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcg                                                                    <  1:1107496‑M2/150‑25 (MQ=255)
                                                                                cTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAg                                                                                                               >  2:1342844/1‑106 (MQ=255)
                                                                                cTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAg                                                                                                               <  1:1342844/106‑1 (MQ=255)
                                                                                 tCGTCAGTGGCTGGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTCCCGCCGAA‑TTTTTGCCGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTATGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaa                                                                  >  1:149455‑M2/1‑124 (MQ=255)
                                                                                      aGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGGTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgttatgtacctgtgggagcgggcatgcccgcgaagaacc                                                             <  1:784523‑M1/150‑61 (MQ=255)
                                                                                        tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCg                                                           <  1:1705173/150‑1 (MQ=255)
                                                                                            ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCGGTGGTCCACAGGTACATCACAGGTATGTGGACTGAATACATACTGTGGGGGCGGGCGTGCCCGCGAAGACGTCGGTgg                                                       >  2:2268539/1‑149 (MQ=255)
                                                                                            ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGTTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTAGTTGc                                                       >  2:1211328/1‑150 (MQ=255)
                                                                                                     ggCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTTTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGc                                              <  2:1107496/150‑1 (MQ=255)
                                                                                                     ggCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACa                                                                                                                     >  2:1042343/1‑79 (MQ=255)
                                                                                                     ggCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACa                                                                                                                     <  1:1042343/79‑1 (MQ=255)
                                                                                                        cTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCa                                                                                                 >  2:2097798/1‑96 (MQ=255)
                                                                                                        cTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCa                                                                                                 <  1:2097798/96‑1 (MQ=255)
                                                                                                              cAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                     <  1:1088142/150‑1 (MQ=255)
                                                                                                                  cggTCGCGGGGGTAG‑GCGCAAATTTTTGCTGCGTTCTTCGCGGGCATGCCCGTCCCCACAGGTACATCACAGGTCCGTGGGCTTCATCCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGtt                                 <  2:292829/149‑1 (MQ=255)
                                                                                                                  aggTGGCGCGGGTGG‑GCGGAAATGTTTGCTGGGTTCTTCGCGGGGATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGACTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGtt                                 <  1:2268539/150‑1 (MQ=39)
                                                                                                                    gTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtg                                                                                      >  2:2154940‑M1/1‑60 (MQ=255)
                                                                                                                    gTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtg                                                                                      <  1:2154940‑M1/95‑36 (MQ=255)
                                                                                                                       gcgGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTc                                                            <  1:950823/118‑1 (MQ=255)
                                                                                                                          ggggTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCCCAGGTACATCACAGGTCTGTGGGCTGCATACCTCCTGTGGTAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                         <  1:854810/150‑1 (MQ=255)
                                                                                                                                     gAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCCCAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc               <  1:1758500/150‑1 (MQ=255)
                                                                                                                                            ttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACTGGGAAATTACAGGTCTGTGGGCTGCATACATCCTGTGGCAGCGGGGATGCGTGCGAAGACGTCGGTGCGGGCTTGGCAGATTCCGGGGTTGGCAGGGATGCGTCTGGCATAGCCt        >  2:1004663/1‑150 (MQ=255)
                                                                                                                                               cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtggga                                                                                   <  2:1980417‑M1/72‑39 (MQ=255)
                                                                                                                                               cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGatgtatgcagcccacagacctgtgatgtacctgtggga                                                                                   >  1:1980417‑M1/1‑34 (MQ=255)
                                                                                                                                               cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc               <  1:2128151/140‑1 (MQ=255)
                                                                                                                                               cTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGc               >  2:2128151/1‑140 (MQ=255)
                                                                                                                                                tGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCGGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGa    >  1:1981089/1‑150 (MQ=255)
                                                                                                                                                tGGGTTCTTCGCGGGCATGCCCGCGCCCACAGCTACGGCGCCGGTGGCTGGGCCGCATACATCCTGCTGGAGCGCGCATGCGCGGGCCGCGGTGGTTTCAGGCTTTGCCGATTCCAGCGTTGCATCGAATGCTTGTGGCATCGCCTGCGa    >  2:32025/1‑150 (MQ=255)
                                                                                                                                                  ggTTCTTCGCGGGCATGCCCGCTGGCCAAGGTACATCACAGGTCTGTGGGCTGCTTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACt  <  1:1211328/150‑1 (MQ=255)
                                                                                                                                                  ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaa                                                                  >  2:1713550‑M2/1‑60 (MQ=255)
                                                                                                                                                  ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaa                                                                  <  1:1713550‑M2/86‑27 (MQ=255)
                                                                                                                                                  ggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCTGTGGGCTGCATACATcctgtgggagcgggcatgcccgcgaagaccccagcaaaaatttccgcctacccccgcgacctcctggcccaggcccgtctgcaagccact  <  1:784523‑M2/150‑91 (MQ=255)
                                                                                                                                                     TCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                         >  1:1619932‑M1/1‑124 (MQ=255)
                                                                                                                                                     TCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGaa                         <  2:1619932‑M1/124‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
TAATGCAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAG‑GCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACT  >  NC_002947/3947809‑3948103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.