| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3991884 = | 87 (0.980) | 6 (0.070) | 6/230 | NT | 6.8% | coding (1229/1446 nt) | PP_3518 | hypothetical protein |
| ? | NC_002947 | 3991921 = | 84 (1.020) | coding (1192/1446 nt) | PP_3518 | hypothetical protein | |||||
GCAGTCCCGACGGCAACCGCATGCTGTCCCGGGATGATGGCGCGCGGGCTACTGACCGTCGGCAGGATACCCGCAATGACCAAGGCCGCCAGCAGAACGGCAACCTGGCCAATCAACGCCGGCAGGGCGACGGCCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3992022‑3991884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggtTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCGGGACTGCCTGCCTTGGCCTCGCGCATTTGCTCGCGGGCCTGACGGTTACTG > NC_002947/3991921‑3992066 GCAGTCCCGACGGCAACCGCATGCTGTCCCGGGATGATGGCGCGCGGGCTACTGACCGTCGGCAGGATACCCGCAATGACCAAGGCCGCCAGCAGAACGGCAACCTGGCCAATCAACGCCGGCAGGGCGACGGCCAG > 1:896597/1‑137GCAGTCCCGACGGCAACCGCATGCTGTCCCGGGATGATGGCGCGCGGGCTACTGACCGTCGGCAGGATACCCGCAATGACCAAGGCCGCCAGCAGAACGGCAACCTGGCCAATCAACGCCGGCAGGGCGACGGCCAG < 2:896597/137‑1 CCTGGCCAATCAACGCCGGCAGGGCGACGGCCAGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCG < 1:662500/131‑1 CCTGGCCAATCAACGCCGGCAGGGCGACGGCCAGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCG > 2:662500/1‑131 CTGGCCAATCAACGCCGGCAGGGCGACGGCCAGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCGG > 1:1753144/1‑131 CTGGCCAATCAACGCCGGCAGGGCGACGGCCAGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCGG < 2:1753144/131‑1 GGCCAATCAACGCCGGCAGGGCGACGGCCAGG‑TGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTAT > 1:2107809/1‑68 GGCCAATCAACGCCGGCAGGGCGACGGCCAGG‑TGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTAT < 2:2107809/68‑1 gttCGGCCAGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCGGGACTGCCTGCCTTGGCCTCGCGCATTTGCTCGCGGGCCTGAC > 2:1766734/4‑150 GCCAGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCGGGACTGCCTGCCTTGGCCTCGCGCATTTGCTCGCGGGCCTGACGGTTA > 2:861860/1‑150 GCCAGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCGGGACTGCCGACCTTCTCCTCGCGCAGTTGCTCGCTGGCCTCACGGTTA > 2:1040176/1‑150 AGGTTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCTGCATCCCGGGACAGCATGCGGTTGCCGTCGGGACTGCCTGCCTTGGCCTCGCGCATTTGCTCGCGGGCCTGACGGTTACTG < 1:762808/150‑1 GCAGTCCCGACGGCAACCGCATGCTGTCCCGGGATGATGGCGCGCGGGCTACTGACCGTCGGCAGGATACCCGCAATGACCAAGGCCGCCAGCAGAACGGCAACCTGGCCAATCAACGCCGGCAGGGCGACGGCCAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3992022‑3991884‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggtTGCCGTTCTGCTGGCGGCCTTGGTCATTGCGGGTATCCTGCCGACGGTCAGTAGCCCGCGCGCCATCATCCCGGGACAGCATGCGGTTGCCGTCGGGACTGCCTGCCTTGGCCTCGCGCATTTGCTCGCGGGCCTGACGGTTACTG > NC_002947/3991921‑3992066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |