| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3996848 = | 92 (1.040) | 6 (0.070) | 4/234 | NT | 6.1% | coding (359/480 nt) | PP_3525 | hypothetical protein |
| ? | NC_002947 | 3996892 = | 96 (1.140) | coding (315/480 nt) | PP_3525 | hypothetical protein | |||||
GCCCAAGGGCTACCTGGAAGCACGCGCCGCTGTATTCGTGGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3997000‑3996848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtaGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCTTGGCACCGTC > NC_002947/3996892‑3997038 GCCCAAGGGCTACCTGGAAGCACGCGCCGCTGTATTCGTGGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGACGACGTATCGTGATGGGCGAGTGGCCAGCCG < 1:2244759/150‑1 CCCAAGGGCTACCTGGAAGCACGCGCCGCTGTATTCGTGGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCGGCCGG > 1:1846065/1‑150 CAAGGGCTACCTGGAAGCACGCGCCGCTGTATTTATTGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTA > 1:2371770/1‑150 CAAGGGCTACCTGGAAGCACGCGCCGCTGTATTCGTGGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTA > 2:2142358/1‑150 CAAGGGCTACCTGGAAGCACGCGCCGCTGTATTCGTGGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTA > 2:1616422/1‑150 CAAGGGCTACCTGGAAGCACGCGCCGCTGTATTCGTGGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTA < 2:21147/150‑1 GCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCA > 1:1761218/1‑150 TTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTT > 2:633863/1‑86 TTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTT < 1:633863/86‑1 TACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTAAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTG > 1:263846/1‑150 TGCTCGACCGTGATGGGCGAGCAG‑CACCCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGG < 1:1787424/141‑1 TGCTCGACCGTGATGGGCGAGCAG‑CACCCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGG > 2:1787424/1‑141 CCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGAC > 1:2130011/1‑138 CCGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGAC < 2:2130011/138‑1 CGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCT > 2:933936/1‑142 CGGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCT < 1:933936/142‑1 GGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCTTGGCACCGT < 2:500062/150‑1 GGTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCTTGGCACCGT < 1:109323/150‑1 GTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCTTGGCACCGTC < 1:1319071/150‑1 GTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCTTG < 1:549908/142‑1 GTAGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCTTG > 2:549908/1‑142 GCCCAAGGGCTACCTGGAAGCACGCGCCGCTGTATTCGTGGCCGACATTCAGCGCATGCCTGCGCTGATCAGCAAACTGTTCGCGGTCCCGGCCATGCGCGATTACAGCTACCGGGTGCTGCTCGACCGTGATGGGCGAGTGGCCAGCCGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3997000‑3996848‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtaGCTGTAATCGCGCATGGCCGGGACCGCGAACAGTTTGCTGATCAGCGCAGGCATGCGCTGAATGTCGGCCACGAATACAGCGGCGCGTGCTTCCAGGTAGCCCTTGGGCTGCTCGGCCAGTGCCGCCTTGACCAGCTTGGCACCGTC > NC_002947/3996892‑3997038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |