New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 400339586 (0.970)6 (0.070) 6/232 NT 6.9% intergenic (+9/+74) PP_3531/PP_3532 hypothetical protein/AsnC family transcriptional regulator
?NC_002947 = 4003419 81 (0.970)intergenic (+33/+50) PP_3531/PP_3532 hypothetical protein/AsnC family transcriptional regulator

CTGGGTGACCGGGTGACCGAGGTGACCTACCAGTTGCAGGCCGCCCCTGCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4003240‑4003395
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGCCTGCAACT  <  NC_002947/4003419‑4003271
                                                                                                                                                                                                                                                                                                                 
CTGGGTGACCGGGTGACCGAGGTGACCTACCAGTTGCAGGCCGCCCCTGCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGT                                                                                                                                                             <  2:794378/150‑1
 TGGTTGACCGGGTGACCGAGGTGACCTACCAGTTGCAGGCCGCCCCTCCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGCCGTTGCGTCCGTCGCGAGCGGTGGCTGAGCGCCAACTTTGACGTG                                                                                                                                                            >  1:184991/1‑150
   GGTCACCGGGTGACCGAGGTGACCTACCAGTTGCAGGCCGCCCCTGCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGCGCGGTGGCTGAGCGCCCACCTTGAAGTCCC                                                                                                                                                          >  2:1055144/1‑150
           GGTGACCGAGGTGACCTACCAGTTGCAGGCCGCCCCTGCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGACGGCCggct                                                                                                                                                  <  2:2211443/150‑5
                              CAGTTGCAGGCCGCCCCTGCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGG                                                                                                                                                        >  1:1460907/1‑125
                              CAGTTGCAGGCCGCCCCTGCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGG                                                                                                                                                        <  2:1460907/125‑1
                                                                      TGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGCCCTGCTGCAGTCGGTCTGCAGCCTGCCGG                                                                                                                          >  1:1168693/1‑115
                                                                      TGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGCCCTGCTGCAGTCGGTCTGCAGCCTGCCGG                                                                                                                          <  2:1168693/115‑1
                                                                                               GCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGCCCTGCTGCAGTCGGTCTGCAGCCTGCC                                                                                                                            <  1:1421182/88‑1
                                                                                               GCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGCCCTGCTGCAGTCGGTCTGCAGCCTGCC                                                                                                                            >  2:1421182/1‑88
                                                                                                                 TACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGCCCTGCTGCAGTCGGTCTGCAGCCT                                                                                                                               >  1:2136364/1‑67
                                                                                                                 TACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGCCCTGCTGCAGTCGGTCTGCAGCCT                                                                                                                               <  2:2136364/67‑1
                                                                                                                                                     TGCCGGCCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGCCT        <  2:1762115/150‑1
                                                                                                                                                     TGCCGGCCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGCCT        <  1:2092940/150‑1
                                                                                                                                                       CCGGCCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGCCTGC      >  2:955038/1‑150
                                                                                                                                                          GCCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGGCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATGCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGCCTGCAAC   >  1:997685/1‑150
                                                                                                                                                          GCCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGC          <  2:1873499/143‑1
                                                                                                                                                          GCCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGC          >  1:1873499/1‑143
                                                                                                                                                           CCCTGCTGCATTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGCCTGCAACT  <  1:2211096/150‑1
                                                                                                                                                                                                                                                                                                                 
CTGGGTGACCGGGTGACCGAGGTGACCTACCAGTTGCAGGCCGCCCCTGCCGGGGATGTGCCAGGGTGGCTGGCCAACCGGTTTGTGGTGGATACGCCGGTGGTGACGTTGCGTACGTTGCGAGCGGTGGCTGAGCGCCAACCTTGAAGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4003240‑4003395
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggcCCTGCTGCAGTCGGTCTGCAGCCTGCCGGCACTTCAAGGTTGGCGCTCAGCCACCGCTCGCAACGTACGCAACGTCACCACCGGCGTATCCACCACAAACCGGTTGGCCAGCCACCCTGGCACATCCCCGGCAGGGGCGGCCTGCAACT  <  NC_002947/4003419‑4003271

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.