New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4296922	68 (0.770)	4 (0.050)	4/242	NT	5.7%	intergenic (+45/‑53)	gloA/PP_3767	lactoylglutathione lyase/hypothetical protein
	?	NC_002947	= 4296963	66 (0.760)					intergenic (+86/‑12)	gloA/PP_3767	lactoylglutathione lyase/hypothetical protein

TTCCAGAAACGCCTGCAGGACGGCCGCATGAACCACCTGGCCTTCGTCAAGGACCCGGACGGTTATTGGGTCGAAGTGATCCAGCCAACCGAGCTCGAAGGCTAAGCGTTCGTCGCGGCGCGCTCGTCAGGCCGGGAACTCCCGGCCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4296773‑4296922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGGGAGTTCCCGGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGGCTGGATCACTTCGACCCAATAACCGTCCGGGTCCTTGACGAA  <  NC_002947/4296963‑4296815                                                                                                                                                                                                                                                                                                               TTCCAGAAACGCCTGCAGGACGGCCGCATGAACCACCTGGCCTTCGTCAAGGACCCGGACGGTTATTGGGTCGAAGTGATCCAGCCAACCGAGCTCGAAGGCTAAGCGTTCGTCGCGGCGCCCTCGTCAGGCCGGGAACTCCCGGCCTCT                                                                                                                                                         <  1:1772090/150‑1                                                                       TCGAAGTGATCCAGCCAACCGAGCTCGAAGGCTAAGCGTTCGTCGCGGCGCGCTCGTCAGGCCGGGAACTCCCGGCCTCTCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAG                                                                                                          >  1:244577/1‑125                                                                       TCGAAGTGATCCAGCCAACCGAGCTCGAAGGCTAAGCGTTCGTCGCGGCGCGCTCGTCAGGCCGGGAACTCCCGGCCTCTCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAG                                                                                                          <  2:244577/125‑1                                                                                TCCAGCCAACCGAGCTCGAAGGCTAAGCGTTCGTCGCGGCGCGCTCGTCAGGCCGGGAACTCCCGGCCTCTCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGG                                                                                                     >  2:221142/1‑121                                                                                                                                              CCGGCCTCTTGCTGTGGTATATGAAG‑‑GTAACTGCTTCACATACCACAGCGAGAGGCCGGGAGTTCCCGGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGGCTGGA                                       >  1:221142/1‑121                                                                                                                                                     CTCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGGGAGTTCCCGGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGCACGCGGGGGTTCGACCCAATAACCGTCCGGGTCCTTGACGA   >  1:737435/1‑150                                                                                                                                                     CTCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGGAAAGTACGTGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGGCTGGATCACTTCGACCCAATAACCGTCCGGGTCCTTGACGA   >  2:2020066/1‑150                                                                                                                                                      TCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGGGAGTTCCCGGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGGCTGGATCACTTCGACCCAATAACCGTCCGGGTCCTTGACGAA  <  1:1648485/150‑1                                                                                                                                                      TCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGGGAGTTCCCGGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGGCTGGATCACTTCGACCC                           <  1:1159406/125‑1                                                                                                                                                      TCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGGGAGTTCCCGGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGGCTGGATCACTTCGACCC                           >  2:1159406/1‑125                                                                                                                                                                                                                                                                                                               TTCCAGAAACGCCTGCAGGACGGCCGCATGAACCACCTGGCCTTCGTCAAGGACCCGGACGGTTATTGGGTCGAAGTGATCCAGCCAACCGAGCTCGAAGGCTAAGCGTTCGTCGCGGCGCGCTCGTCAGGCCGGGAACTCCCGGCCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4296773‑4296922 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctCGCTGTGGTATGTGAAGCAGTTAC‑‑CTTCATATACCACAGCAAGAGGCCGGGAGTTCCCGGCCTGACGAGCGCGCCGCGACGAACGCTTAGCCTTCGAGCTCGGTTGGCTGGATCACTTCGACCCAATAACCGTCCGGGTCCTTGACGAA  <  NC_002947/4296963‑4296815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.