| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4443120 | 85 (0.960) | 8 (0.090) | 5/236 | NT | 8.5% | coding (906/1314 nt) | nicT | metabolite transport protein NicT |
| ? | NC_002947 | = 4443151 | 90 (1.060) | coding (875/1314 nt) | nicT | metabolite transport protein NicT | |||||
AATGGCGAACAGCACCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4442970‑4443120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGC < NC_002947/4443151‑4443006 AATGGCGAACAGCACCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGC < 1:1487402/150‑1 TGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGG > 1:368293/1‑150 AACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCA > 1:61803/1‑150 AAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGC < 2:368293/150‑1 GGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGG < 2:61803/150‑1 GCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATATCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGG > 1:1170468/1‑149 GCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATATCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGG < 2:1170468/149‑1 TGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAG‑‑CGCGGCCATTCCAAGCCTGGCCGC < 1:1242238/83‑1 TGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAG‑‑CGCGGCCATTCCAAGCCTGGCCGC > 2:1242238/1‑83 GGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGC > 1:1406103/1‑150 GGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGC < 1:1984545/150‑1 GGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGC < 2:1098381/150‑1 AATGGCGAACAGCACCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4442970‑4443120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGC < NC_002947/4443151‑4443006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |